Yamaoki Yudai, Nagata Takashi, Sakamoto Tomoki, Katahira Masato
Institute of Advanced Energy, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Graduate School of Energy Science, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Biophys Rev. 2020 Apr;12(2):411-417. doi: 10.1007/s12551-020-00664-x. Epub 2020 Mar 6.
The inside of living cells is highly crowded with biological macromolecules. It has long been considered that the properties of nucleic acids and proteins, such as their structures, dynamics, interactions, and enzymatic activities, in intracellular environments are different from those under in vitro dilute conditions. In-cell NMR is a robust and powerful method used in the direct measurement of those properties in living cells. However, until 2 years ago, in-cell NMR was limited to Xenopus laevis oocytes due to technical challenges of incorporating exogenous nucleic acids. In the last 2 years, in-cell NMR spectra of nucleic acid introduced into living human cells have been reported. By use of the in-cell NMR spectra of nucleic acids in living human cells, the formation of hairpin structures with Watson-Crick base pairs, and i-motif and G-quadruplex structures with non-Watson-Crick base pairs was demonstrated. Others investigated the mRNA-antisense drug interactions and DNA-small compound interactions. In this article, we review these studies to underscore the potential of in-cell NMR for addressing the structures, dynamics, and interactions of nucleic acids in living human cells.
活细胞内部充满了生物大分子。长期以来,人们一直认为,在细胞内环境中,核酸和蛋白质的特性,如它们的结构、动力学、相互作用和酶活性,与体外稀释条件下的不同。细胞内核磁共振是一种用于直接测量活细胞中这些特性的强大而可靠的方法。然而,直到两年前,由于引入外源核酸的技术挑战,细胞内核磁共振仅限于非洲爪蟾卵母细胞。在过去的两年里,已经报道了引入活的人类细胞中的核酸的细胞内核磁共振光谱。通过使用活的人类细胞中核酸的细胞内核磁共振光谱,证明了具有沃森-克里克碱基对的发夹结构以及具有非沃森-克里克碱基对的i-基序和G-四链体结构的形成。其他人研究了mRNA-反义药物相互作用和DNA-小分子化合物相互作用。在本文中,我们回顾这些研究,以强调细胞内核磁共振在解决活的人类细胞中核酸的结构、动力学和相互作用方面的潜力。