Krafcikova Michaela, Hänsel-Hertsch Robert, Trantirek Lukas, Foldynova-Trantirkova Silvie
CEITEC-Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic.
Methods Mol Biol. 2019;2035:397-405. doi: 10.1007/978-1-4939-9666-7_25.
G-quadruplexes are inherently polymorphic nucleic acid structures. Their folding topology depends on the nucleic acid primary sequence and on physical-chemical environmental factors. Hence, it remains unclear if a G-quadruplex topology determined in the test tube (in vitro) will also form in vivo. Characterization of G-quadruplexes in their native environment has been proposed as an efficient strategy to tackle this issue. So far, characterization of G-quadruplex structures in living cells has relied exclusively on the use of Xenopus laevis oocytes as a eukaryotic cell model system. Here, we describe the protocol for the preparation of X. laevis oocytes for studies of G-quadruplexes as well as other nucleic acids motifs under native conditions using in-cell NMR spectroscopy.
G-四链体是固有的多态性核酸结构。它们的折叠拓扑结构取决于核酸一级序列和物理化学环境因素。因此,在试管(体外)中确定的G-四链体拓扑结构在体内是否也会形成仍不清楚。在其天然环境中对G-四链体进行表征已被提议作为解决这一问题的有效策略。到目前为止,在活细胞中对G-四链体结构的表征完全依赖于使用非洲爪蟾卵母细胞作为真核细胞模型系统。在这里,我们描述了使用细胞内核磁共振光谱法在天然条件下制备用于研究G-四链体以及其他核酸基序的非洲爪蟾卵母细胞的方案。