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转录组揭示了(DC.)Danser 中胚乳合点吸器发育过程中的基因变化。

Transcriptome Reveals Gene Changes in the Development of the Endosperm Chalazal Haustorium in (DC.) Danser.

机构信息

Guangxi Botanical Garden of Medicinal Plants, Nanning 530023, China.

出版信息

Biomed Res Int. 2020 Feb 18;2020:7871918. doi: 10.1155/2020/7871918. eCollection 2020.

Abstract

Loranthus () is a facultative, hemiparasite and stem parasitic plant that attacks other plants for living. Transcriptome sequencing and bioinformatics analysis were applied in this study to identify the gene expression profiles of fresh seeds (CK), baby (FB), and adult haustoria tissues (FD). We assembled 160,571 loranthus genes, of which 64,926, 35,417, and 47,249 were aligned to NR, GO, and KEGG pathway databases, respectively. We identified 14,295, 15,921, and 16,402 genes in CK, FB, and FD, respectively. We next identified 5,480 differentially expressed genes (DEGs) in the process, of which 258, 174, 81, and 94 were encoding ribosomal proteins (RP), transcription factors (TF), ubiquitin, and disease resistance proteins, respectively. Some DEGs were identified to be upregulated along with the haustoria development (e.g., 68 RP and 26 ubiquitin genes). Notably, 36 RP DEGs peak at FB; 10 ER, 5 WRKY, 6 bHLH, and 4 MYB TF genes upregulated only in FD. Further, we identified 4 out of 32 microRNA genes dysregulated in the loranthus haustoria development. This is the first haustoria transcriptome of loranthus, and our findings will improve our understanding of the molecular mechanism of haustoria.

摘要

桑寄生(Loranthus)是一种兼性半寄生植物,它以攻击其他植物为生。本研究应用转录组测序和生物信息学分析方法,鉴定了新鲜种子(CK)、幼果(FB)和成熟吸器组织(FD)的基因表达谱。我们共组装了 160571 条桑寄生基因,其中 64926、35417 和 47249 条分别比对到 NR、GO 和 KEGG 数据库。我们在 CK、FB 和 FD 中分别鉴定到 14295、15921 和 16402 个基因。接着,我们鉴定到 5480 个差异表达基因(DEGs),其中 258、174、81 和 94 个分别编码核糖体蛋白(RP)、转录因子(TF)、泛素和抗病蛋白。一些 DEGs 的表达随着吸器的发育而上调(例如,68 个 RP 和 26 个泛素基因)。值得注意的是,36 个 RP DEGs 在 FB 时达到峰值;10 个 ER、5 个 WRKY、6 个 bHLH 和 4 个 MYB TF 基因仅在 FD 中上调。此外,我们鉴定到 32 个 microRNA 基因中有 4 个在桑寄生吸器发育过程中失调。这是桑寄生吸器的第一个转录组,我们的研究结果将有助于提高对半寄生植物吸器发育分子机制的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f9d/7053452/628481bca34f/BMRI2020-7871918.001.jpg

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