在青枯雷尔氏菌中,恩特纳-杜德洛夫途径和非氧化戊糖磷酸途径绕过糖酵解和氧化戊糖磷酸途径。
The Entner-Doudoroff and Nonoxidative Pentose Phosphate Pathways Bypass Glycolysis and the Oxidative Pentose Phosphate Pathway in Ralstonia solanacearum.
作者信息
Jyoti Poonam, Shree Manu, Joshi Chandrakant, Prakash Tulika, Ray Suvendra Kumar, Satapathy Siddhartha Sankar, Masakapalli Shyam Kumar
机构信息
BioX Center, School of Basic Sciences, Indian Institute of Technology Mandi, Kamand, Himachal Pradesh, India.
Department of Molecular Biology and Biotechnology, Tezpur University, Tezpur, Assam, India.
出版信息
mSystems. 2020 Mar 10;5(2):e00091-20. doi: 10.1128/mSystems.00091-20.
In , a devastating phytopathogen whose metabolism is poorly understood, we observed that the Entner-Doudoroff (ED) pathway and nonoxidative pentose phosphate pathway (non-OxPPP) bypass glycolysis and OxPPP under glucose oxidation. Evidence derived from C stable isotope feeding and genome annotation-based comparative metabolic network analysis supported the observations. Comparative metabolic network analysis derived from the currently available 53 annotated strains, including a recently reported strain (F1C1), representing the four phylotypes, confirmed the lack of key genes coding for phosphofructokinase () and phosphogluconate dehydrogenase () enzymes that are relevant for glycolysis and OxPPP, respectively. F1C1 cells fed with [C]glucose (99% [1-C]glucose or 99% [1,2-C]glucose or 40% [C]glucose) followed by gas chromatography-mass spectrometry (GC-MS)-based labeling analysis of fragments from amino acids, glycerol, and ribose provided clear evidence that rather than glycolysis and the OxPPP, the ED pathway and non-OxPPP are the main routes sustaining metabolism in The C incorporation in the mass ions of alanine ( 260 and 232), valine ( 288 and 260), glycine ( 218), serine ( 390 and 362), histidine ( 440 and 412), tyrosine ( 466 and 438), phenylalanine ( 336 and 308), glycerol ( 377), and ribose ( 160) mapped the pathways supporting the observations. The outcomes help better define the central carbon metabolic network of that can be integrated with C metabolic flux analysis as well as flux balance analysis studies for defining the metabolic phenotypes. Understanding the metabolic versatility of is important, as it regulates the trade-off between virulence and metabolism (1, 2) in a wide range of plant hosts. Due to a lack of clear evidence until this work, several published research papers reported on the potential roles of glycolysis and the oxidative pentose phosphate pathway (OxPPP) in (3, 4). This work provided evidence from C stable isotope feeding and genome annotation-based comparative metabolic network analysis that the Entner-Doudoroff pathway and non-OxPPP bypass glycolysis and OxPPP during the oxidation of glucose, a component of the host xylem pool that serves as a potential carbon source (5). The outcomes help better define the central carbon metabolic network of that can be integrated with C metabolic flux analysis as well as flux balance analysis studies for defining the metabolic phenotypes. The study highlights the need to critically examine phytopathogens whose metabolism is poorly understood.
在一种代谢情况鲜为人知的毁灭性植物病原体中,我们观察到在葡萄糖氧化过程中,恩特纳-杜德洛夫(ED)途径和非氧化戊糖磷酸途径(non-OxPPP)绕过了糖酵解和氧化戊糖磷酸途径(OxPPP)。基于碳稳定同位素示踪和基于基因组注释的比较代谢网络分析所获得的证据支持了这些观察结果。对目前已注释的53株菌株(包括最近报道的代表四种系统型的菌株F1C1)进行比较代谢网络分析,证实了分别与糖酵解和OxPPP相关的磷酸果糖激酶()和6-磷酸葡萄糖酸脱氢酶()编码关键基因的缺失。用[C]葡萄糖(99% [1-C]葡萄糖或99% [1,2-C]葡萄糖或40% [C]葡萄糖)喂养F1C1细胞,随后对氨基酸、甘油和核糖的片段进行基于气相色谱-质谱(GC-MS)的标记分析,提供了明确证据,表明在该病原体中,维持代谢的主要途径是ED途径和non-OxPPP,而非糖酵解和OxPPP。丙氨酸( 260和 232)、缬氨酸( 288和 260)、甘氨酸( 218)、丝氨酸( 390和 362)、组氨酸( 440和 412)、酪氨酸( 466和 438)、苯丙氨酸( 336和 308)、甘油( 377)和核糖( 160)的质量离子中的碳掺入情况描绘了支持这些观察结果的途径。这些结果有助于更好地定义该病原体的中心碳代谢网络,该网络可与碳代谢通量分析以及通量平衡分析研究相结合,以定义代谢表型。了解该病原体的代谢多样性很重要,因为它在多种植物宿主中调节毒力和代谢之间的权衡(1, 2)。由于在这项工作之前缺乏明确证据,一些已发表的研究论文报道了糖酵解和氧化戊糖磷酸途径(OxPPP)在该病原体中的潜在作用(3, 4)。这项工作通过碳稳定同位素示踪和基于基因组注释的比较代谢网络分析提供了证据,表明在葡萄糖氧化过程中,恩特纳-杜德洛夫途径和non-OxPPP绕过了糖酵解和OxPPP,葡萄糖是宿主木质部池的一种成分,可作为潜在碳源(5)。这些结果有助于更好地定义该病原体的中心碳代谢网络,该网络可与碳代谢通量分析以及通量平衡分析研究相结合,以定义代谢表型。该研究强调了严格审查代谢情况鲜为人知的植物病原体的必要性。