Biotechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
Department of Microbiology and Immunology, University of Minnesota, Minneapolis, Minnesota, USA.
mBio. 2020 Mar 10;11(2):e00111-20. doi: 10.1128/mBio.00111-20.
OleA, a member of the thiolase superfamily, is known to catalyze the Claisen condensation of long-chain acyl coenzyme A (acyl-CoA) substrates, initiating metabolic pathways in bacteria for the production of membrane lipids and β-lactone natural products. OleA homologs are found in diverse bacterial phyla, but to date, only one homodimeric OleA has been successfully purified to homogeneity and characterized A major impediment for the identification of new OleA enzymes has been protein instability and time-consuming assays. Here, we developed a bioinformatic pipeline to identify OleA homologs and a new rapid assay to screen OleA enzyme activity and map their taxonomic diversity. The screen is based on the discovery that OleA displayed surprisingly high rates of -nitrophenyl ester hydrolysis, an activity not shared by other thiolases, including FabH. The high rates allowed activity to be determined and with heterologously expressed OleA via the release of the yellow -nitrophenol product. Seventy-four putative genes identified in the genomes of diverse bacteria were heterologously expressed in , and 25 showed activity with -nitrophenyl esters. The OleA proteins tested were encoded in variable genomic contexts from seven different phyla and are predicted to function in distinct membrane lipid and β-lactone natural product metabolic pathways. This study highlights the diversity of unstudied OleA proteins and presents a rapid method for their identification and characterization. Microbially produced β-lactones are found in antibiotic, antitumor, and antiobesity drugs. Long-chain olefinic membrane hydrocarbons have potential utility as fuels and specialty chemicals. The metabolic pathway to both end products share bacterial enzymes denoted as OleA, OleC, and OleD that transform acyl-CoA cellular intermediates into β-lactones. Bacteria producing membrane hydrocarbons via the Ole pathway additionally express a β-lactone decarboxylase, OleB. Both β-lactone and olefin biosynthesis pathways are initiated by OleA enzymes that define the overall structure of the final product. There is currently very limited information on OleA enzymes apart from the single representative from In this study, bioinformatic analysis identified hundreds of new, putative OleA proteins, 74 proteins were screened via a rapid whole-cell method, leading to the identification of 25 stably expressed OleA proteins representing seven bacteria phyla.
OleA 是硫解酶超家族的成员,已知能催化长链酰基辅酶 A(酰基辅酶 A)底物的 Claisen 缩合反应,为细菌中膜脂和β-内酰胺天然产物的生物合成途径的启动提供了起始。OleA 同源物存在于不同的细菌门中,但迄今为止,只有一种同二聚体 OleA 被成功地纯化为均相并进行了表征。新的 OleA 酶的鉴定主要受到蛋白质不稳定性和耗时的测定的阻碍。在这里,我们开发了一种生物信息学管道来识别 OleA 同源物,并开发了一种新的快速测定法来筛选 OleA 酶活性并绘制其分类多样性。该筛选基于以下发现:OleA 显示出令人惊讶的高的硝基苯酚酯水解速率,而其他硫解酶,包括 FabH,不具有这种活性。高的水解速率使得能够通过释放黄色硝基苯酚产物来测定活性,该活性通过异源表达的 OleA 实现。在不同细菌的基因组中鉴定出的 74 个假定基因在大肠杆菌中异源表达,其中 25 个基因对硝基苯酚酯显示出活性。所测试的 OleA 蛋白在来自七个不同门的可变基因组环境中被编码,并预测在不同的膜脂和β-内酰胺天然产物代谢途径中发挥作用。本研究突出了未研究的 OleA 蛋白的多样性,并提出了一种快速鉴定和表征它们的方法。微生物产生的β-内酰胺存在于抗生素、抗肿瘤和抗肥胖药物中。长链烯烃膜烃具有作为燃料和特种化学品的潜在用途。这两个终产物的代谢途径共享被称为 OleA、OleC 和 OleD 的细菌酶,这些酶将酰基辅酶 A 细胞中间体转化为β-内酰胺。通过 Ole 途径产生膜烃的细菌另外表达β-内酰胺脱羧酶 OleB。β-内酰胺和烯烃生物合成途径都是由定义最终产物整体结构的 OleA 酶启动的。除了来自 中的单一代表外,目前关于 OleA 酶的信息非常有限。在本研究中,生物信息学分析鉴定了数百种新的、假定的 OleA 蛋白,通过快速的全细胞方法筛选了 74 种蛋白,导致鉴定了代表七个细菌门的 25 种稳定表达的 OleA 蛋白。