Jensen Matthew R, Goblirsch Brandon R, Christenson James K, Esler Morgan A, Mohamed Fatuma A, Wackett Lawrence P, Wilmot Carrie M
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, U.S.A.
The BioTechnology Institute, University of Minnesota, Saint Paul, MN, U.S.A.
Biochem J. 2017 Nov 10;474(23):3871-3886. doi: 10.1042/BCJ20170642.
In the interest of decreasing dependence on fossil fuels, microbial hydrocarbon biosynthesis pathways are being studied for renewable, tailored production of specialty chemicals and biofuels. One candidate is long-chain olefin biosynthesis, a widespread bacterial pathway that produces waxy hydrocarbons. Found in three- and four-gene clusters, encodes the enzymes necessary to produce -olefins that differ by alkyl chain length, degree of unsaturation, and alkyl chain branching. The first enzyme in the pathway, OleA, catalyzes the Claisen condensation of two fatty acyl-coenzyme A (CoA) molecules to form a β-keto acid. In this report, the mechanistic role of OleA Glu117 is investigated through mutant enzymes. Crystal structures were determined for each mutant as well as their complex with the inhibitor cerulenin. Complemented by substrate modeling, these structures suggest that Glu117 aids in substrate positioning for productive carbon-carbon bond formation. Analysis of acyl-CoA substrate hydrolysis shows diminished activity in all mutants. When the active site lacks an acidic residue in the 117 position, OleA cannot form condensed product, demonstrating that Glu117 has a critical role upstream of the essential condensation reaction. Profiling of pH dependence shows that the apparent p for Glu117 is affected by mutagenesis. Taken together, we propose that Glu117 is the general base needed to prime condensation via deprotonation of the second, non-covalently bound substrate during turnover. This is the first example of a member of the thiolase superfamily of condensing enzymes to contain an active site base originating from the second monomer of the dimer.
为了减少对化石燃料的依赖,人们正在研究微生物碳氢化合物生物合成途径,以实现特种化学品和生物燃料的可再生定制生产。其中一个候选途径是长链烯烃生物合成,这是一种广泛存在于细菌中的途径,可产生蜡状碳氢化合物。该途径存在于三基因和四基因簇中,编码产生不同烷基链长度、不饱和度和烷基链分支的α-烯烃所需的酶。该途径中的第一种酶OleA催化两个脂肪酰辅酶A(CoA)分子的克莱森缩合反应,形成β-酮酸。在本报告中,通过突变酶研究了OleA Glu117的作用机制。测定了每个突变体及其与抑制剂浅蓝菌素复合物的晶体结构。通过底物建模补充,这些结构表明Glu117有助于底物定位,以形成有效的碳-碳键。酰基辅酶A底物水解分析表明,所有突变体的活性均降低。当活性位点在117位缺乏酸性残基时,OleA无法形成缩合产物,这表明Glu117在关键缩合反应的上游起关键作用。pH依赖性分析表明,Glu117的表观pKa受诱变影响。综上所述,我们认为Glu117是在周转过程中通过使第二个非共价结合底物去质子化来引发缩合反应所需的通用碱。这是缩合酶硫解酶超家族成员中第一个含有源自二聚体第二个单体的活性位点碱基的例子。