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sp. nov.,分离自人类精液。

sp. nov., isolated from human semen.

机构信息

The Second Clinic Medical College, Guangzhou University of Chinese Medicine, Guangzhou 510006, PR China.

The Second Hospital, University of South China, Hengyang 421001, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Apr;70(4):2588-2595. doi: 10.1099/ijsem.0.004074. Epub 2020 Mar 12.

Abstract

Two -like isolates with similar biochemical characteristics, designated strains SZY H1 and SZY H2, were isolated from human semen specimens. Cells were Gram-negative, non-motile, non-acid-fast, pleomorphic rods or coccobacilli. The major fatty acids (>10 %) were C, C, iso-C and/or C 3-OH and C 6 and/or C 7. The polar lipids were determined to be phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid, an unidentified aminophospholipid, two unidentified polar lipids and four unidentified aminolipids. The major polyamine was found to be cadaverine. The near-full-length (1462 nt) 16S rRNA gene sequences analysis showed the two isolates were nearly identical (>99.8 %), and closely matched ATCC 33390 with 98.9-99.1 % sequence similarities. Phylogenetic analysis based on 16S rRNA gene sequences and concatenation of 30 protein markers also revealed that the isolates clustered together with ATCC 33390, and formed a distinct lineage well separated from the other members of the genus . Further, the average nucleotide identity values between the two isolates and their related species were below the established cut-off values for species delineation (95 %). Based on these findings, the two isolates are considered to represent a new species of the genus , for which name sp. nov. is proposed. The type strain is SZY H1 (=NBRC 113782=CGMCC 1.17137).

摘要

两株具有相似生化特性的类似 2 型分离株,分别命名为 SZY H1 和 SZY H2,从人类精液标本中分离得到。细胞革兰氏阴性,非运动性,非酸抗性,多形性杆状或球杆菌。主要脂肪酸(>10%)为 C 、 C 、 iso-C 和/或 C 3-OH 和 C 6 和/或 C 7 。极性脂类被鉴定为磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的磷脂、一种未鉴定的氨基磷脂、两种未鉴定的极性脂类和四种未鉴定的氨基脂类。主要聚胺被发现为尸胺。全长度(1462nt)16S rRNA 基因序列分析表明,两株分离株几乎完全相同(>99.8%),与 ATCC 33390 的序列相似度为 98.9-99.1%。基于 16S rRNA 基因序列和 30 个蛋白标记物的串联的系统发育分析也表明,这些分离株与 ATCC 33390 聚集在一起,形成一个与属内其他成员明显分离的独特谱系。此外,两株分离株与其相关种之间的平均核苷酸同一性值低于种划界的建立的截止值(95%)。基于这些发现,这两株分离株被认为代表了属的一个新种,提议将其命名为 sp. nov.。模式株为 SZY H1(=NBRC 113782=CGMCC 1.17137)。

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