Biomaterials and Biocatalysts Group, Temasek Life Sciences Laboratory, 1 Research Link, National University of Singapore, 117604, Singapore.
Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia.
Int J Syst Evol Microbiol. 2020 Apr;70(4):2640-2647. doi: 10.1099/ijsem.0.004084. Epub 2020 Mar 23.
A Gram-stain-negative, aerobic, rod-shaped, leaf-associated bacterium, designated JS23, was isolated from surface-sterilized leaf tissue of an oil palm grown in Singapore and was investigated by polyphasic taxonomy. Phylogenetic analyses based on 16S rRNA gene sequences and 180 conserved genes in the genome of several members of revealed that strain JS23 formed a distinct evolutionary lineage independent of other taxa within the family . The predominant ubiquinone was Q-8. The primary polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, and an unidentified aminophospholipid. The major fatty acids were C, summed feature 3 (C 7 /C 6) and summed feature 8 (C 7 /C 6). The size of the genome is 5.36 Mbp with a DNA G+C content of 66.2 mol%. Genomic relatedness measurements such as average nucleotide identity, genome-to-genome distance and digital DNA-DNA hybridization clearly distinguished strain JS23 from the closely related genera , , , , , , and . Furthermore, average amino acid identity values and the percentages of conserved proteins, 56.0-68.4 and 28.2-45.5, respectively, were well below threshold values for genus delineation and supported the assignment of JS23 to a novel genus. On the basis of the phylogenetic, biochemical, chemotaxonomic and phylogenomic evidence, strain JS23 is proposed to represent a novel species of a new genus within the family , for which the name gen. nov., sp. nov., is proposed with the type strain of JS23 (= DSM 27307=KACC 17592).
一株革兰氏阴性、需氧、杆状、叶相关细菌,被命名为 JS23,从生长在新加坡的油棕的表面消毒的叶组织中分离出来,并通过多相分类学进行了研究。基于 16S rRNA 基因序列和基因组中 180 个保守基因的系统发育分析表明,菌株 JS23 形成了一个独特的进化分支,与该科内的其他分类群无关。主要的醌类是 Q-8。主要的极性脂是磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油和一种未鉴定的氨基磷脂。主要脂肪酸是 C、总和特征 3(C 7 /C 6)和总和特征 8(C 7 /C 6)。基因组大小为 5.36 Mbp,DNA G+C 含量为 66.2 mol%。基因组相关测量,如平均核苷酸同一性、基因组到基因组的距离和数字 DNA-DNA 杂交,清楚地将菌株 JS23 与密切相关的属,如,,,,,,和区分开来。此外,平均氨基酸同一性值和保守蛋白的百分比,分别为 56.0-68.4 和 28.2-45.5,均低于属定义的阈值,支持将 JS23 归属于一个新属。基于系统发育、生化、化学分类学和系统基因组学证据,菌株 JS23 代表了该科内一个新属的一个新种,建议将其命名为 ,新属,新种,其模式菌株为 JS23(= DSM 27307=KACC 17592)。