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北极十字花科植物对极端非生物胁迫的多种遗传适应途径。

Multiple Genetic Trajectories to Extreme Abiotic Stress Adaptation in Arctic Brassicaceae.

机构信息

Natural History Museum, University of Oslo, Oslo, Norway.

Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway.

出版信息

Mol Biol Evol. 2020 Jul 1;37(7):2052-2068. doi: 10.1093/molbev/msaa068.

Abstract

Extreme environments offer powerful opportunities to study how different organisms have adapted to similar selection pressures at the molecular level. Arctic plants have adapted to some of the coldest and driest biomes on Earth and typically possess suites of similar morphological and physiological adaptations to extremes in light and temperature. Here, we compare patterns of molecular evolution in three Brassicaceae species that have independently colonized the Arctic and present some of the first genetic evidence for plant adaptations to the Arctic environment. By testing for positive selection and identifying convergent substitutions in orthologous gene alignments for a total of 15 Brassicaceae species, we find that positive selection has been acting on different genes, but similar functional pathways in the three Arctic lineages. The positively selected gene sets identified in the three Arctic species showed convergent functional profiles associated with extreme abiotic stress characteristic of the Arctic. However, there was little evidence for independently fixed mutations at the same sites and for positive selection acting on the same genes. The three species appear to have evolved similar suites of adaptations by modifying different components in similar stress response pathways, implying that there could be many genetic trajectories for adaptation to the Arctic environment. By identifying candidate genes and functional pathways potentially involved in Arctic adaptation, our results provide a framework for future studies aimed at testing for the existence of a functional syndrome of Arctic adaptation in the Brassicaceae and perhaps flowering plants in general.

摘要

极端环境为研究不同生物如何在分子水平上适应相似的选择压力提供了有力的机会。北极植物已经适应了地球上一些最寒冷和最干燥的生物群落,通常具有一系列相似的形态和生理适应极端的光照和温度的特征。在这里,我们比较了三种独立殖民北极的十字花科物种的分子进化模式,并提供了一些植物适应北极环境的遗传证据。通过测试正选择并确定了总共 15 种十字花科物种的同源基因比对中的趋同替换,我们发现正选择作用于不同的基因,但在三个北极谱系中作用于相似的功能途径。在三个北极物种中鉴定出的被正选择的基因集显示出与北极特有的极端非生物胁迫相关的趋同功能特征。然而,很少有证据表明相同位点的独立固定突变和相同基因的正选择。这三个物种似乎通过修饰相似的胁迫反应途径中的不同成分来进化出相似的适应套件,这意味着适应北极环境可能有许多遗传途径。通过鉴定可能参与北极适应的候选基因和功能途径,我们的研究结果为未来的研究提供了一个框架,旨在测试十字花科植物甚至整个开花植物中北极适应的功能综合症状是否存在。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cadd/7306683/be7c9c5755fe/msaa068f1.jpg

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