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结构分析 Cj1427,一种必需的 NAD 依赖型脱氢酶,用于荚膜多糖中庚糖残基的生物合成。

Structural Analysis of Cj1427, an Essential NAD-Dependent Dehydrogenase for the Biosynthesis of the Heptose Residues in the Capsular Polysaccharides of .

机构信息

Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States.

Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States.

出版信息

Biochemistry. 2020 Apr 7;59(13):1314-1327. doi: 10.1021/acs.biochem.0c00096. Epub 2020 Mar 23.

DOI:10.1021/acs.biochem.0c00096
PMID:32168450
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7509852/
Abstract

Many strains of display modified heptose residues in their capsular polysaccharides (CPS). The precursor heptose was previously shown to be GDP-d--α-d--heptose, from which a variety of modifications of the sugar moiety have been observed. These modifications include the generation of 6-deoxy derivatives and alterations of the stereochemistry at C3-C6. Previous work has focused on the enzymes responsible for the generation of the 6-deoxy derivatives and those involved in altering the stereochemistry at C3 and C5. However, the generation of the 6-hydroxyl heptose residues remains uncertain due to the lack of a specific enzyme to catalyze the initial oxidation at C4 of GDP-d--α-d--heptose. Here we reexamine the previously reported role of Cj1427, a dehydrogenase found in NTCC 11168 (HS:2). We show that Cj1427 is co-purified with bound NADH, thus hindering catalysis of oxidation reactions. However, addition of a co-substrate, α-ketoglutarate, converts the bound NADH to NAD. In this form, Cj1427 catalyzes the oxidation of l-2-hydroxyglutarate back to α-ketoglutarate. The crystal structure of Cj1427 with bound GDP-d--α-d--heptose shows that the NAD(H) cofactor is ideally positioned to catalyze the oxidation at C4 of the sugar substrate. Additionally, the overall fold of the Cj1427 subunit places it into the well-defined short-chain dehydrogenase/reductase superfamily. The observed quaternary structure of the tetrameric enzyme, however, is highly unusual for members of this superfamily.

摘要

许多 菌株在其荚膜多糖 (CPS) 中显示出修饰的庚糖残基。先前已显示该前体庚糖为 GDP-d--α-d--庚糖,其中观察到糖部分的各种修饰。这些修饰包括 6-脱氧衍生物的生成以及 C3-C6 立体化学的改变。先前的工作集中于负责生成 6-脱氧衍生物的酶以及那些参与改变 C3 和 C5 立体化学的酶。然而,由于缺乏催化 GDP-d--α-d--庚糖 C4 初始氧化的特定酶,因此 6-羟庚糖残基的生成仍然不确定。在这里,我们重新检查了先前报道的 Cj1427 的作用,Cj1427 是在 NTCC 11168 (HS:2) 中发现的一种脱氢酶。我们表明 Cj1427 与结合的 NADH 共纯化,从而阻碍氧化反应的催化。然而,添加辅底物 α-酮戊二酸将结合的 NADH 转化为 NAD。在这种形式下,Cj1427 催化 l-2-羟基戊二酸回氧化为 α-酮戊二酸。与结合的 GDP-d--α-d--庚糖的 Cj1427 的晶体结构表明,NAD(H)辅因子的位置非常适合催化糖底物 C4 的氧化。此外,Cj1427 亚基的整体折叠将其置于明确定义的短链脱氢酶/还原酶超家族中。然而,该酶四聚体的观察到的四级结构对于该超家族的成员来说非常不寻常。

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