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中国血流感染患者分离的耐甲氧西林金黄色葡萄球菌 398 型序列株的全基因组分析。

Whole-Genome Analysis of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Strains Isolated From Patients With Bacteremia in China.

机构信息

Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China.

Department of Clinical Laboratory, Ordos Central Hospital, Nei Mongol, China.

出版信息

J Infect Dis. 2020 Mar 16;221(Suppl 2):S220-S228. doi: 10.1093/infdis/jiz575.

DOI:10.1093/infdis/jiz575
PMID:32176793
Abstract

Sequence type (ST) 398 is the most prevalent clone of livestock-associated methicillin-resistant Staphylococcus aureus (MRSA). To evaluate the molecular characteristics and phylogeny of Chinese ST398 isolates, 4 MRSA ST398 strains and 4 methicillin-susceptible S. aureus (MSSA) ST398 strains were collected from patients with bacteremia at 6 teaching hospitals in China between 1999 and 2016. Moreover, 689 ST398 genome sequences were downloaded from the GenBank database for comparison. The 4 MRSA ST398 strains were resistant to β-lactam antibiotics, and 2 strains were also resistant to erythromycin. Among the 4 MSSA ST398 strains, 2 strains displayed multidrug resistance (MDR) and were resistant to penicillin, erythromycin, tetracycline, and gentamicin. The accessory genome of MSSA ST398 was more diverse than that of MRSA ST398. All 4 MRSA ST398 strains carried type V staphylococcal cassette chromosome mec elements; however, MSSA ST398 carried more resistance genes than MRSA ST398. These 4 MRSA ST398 strains carried hemolysin, along with virulence genes associated with immune invasion and protease. Phylogenic analysis showed that the 4 MRSA ST398 strains clustered in 1 clade. The global ST398 phylogeny showed that ST398 was divided into an animal clade and a human clade, and the ST398 strains of this study clustered in the human clade. A small number of human strains were also present in the animal clade and vice versa, suggesting transmission of ST398 between animals and humans. In conclusion, livestock-associated MRSA ST398 has caused severe infections in Chinese hospitals, and it should therefore be paid more attention to and monitored.

摘要

序列型 398 是最流行的与牲畜相关的耐甲氧西林金黄色葡萄球菌(MRSA)克隆。为了评估中国 ST398 分离株的分子特征和系统发育,我们从 1999 年至 2016 年期间在中国 6 所教学医院的血培养患者中收集了 4 株 MRSA ST398 株和 4 株甲氧西林敏感金黄色葡萄球菌(MSSA)ST398 株。此外,还从 GenBank 数据库中下载了 689 株 ST398 基因组序列进行比较。4 株 MRSA ST398 株对β-内酰胺类抗生素耐药,2 株还对红霉素耐药。在 4 株 MSSA ST398 株中,2 株表现出多重耐药(MDR),并对青霉素、红霉素、四环素和庆大霉素耐药。MSSA ST398 的辅助基因组比 MRSA ST398 更为多样化。所有 4 株 MRSA ST398 株均携带 V 型葡萄球菌盒式染色体 mec 元件;然而,MSSA ST398 携带的耐药基因比 MRSA ST398 多。这 4 株 MRSA ST398 株携带溶血性毒素,以及与免疫入侵和蛋白酶相关的毒力基因。系统发育分析表明,这 4 株 MRSA ST398 株聚集在 1 个分支中。全球 ST398 系统发育显示,ST398 分为动物分支和人类分支,本研究的 ST398 株聚集在人类分支中。少数人类菌株也存在于动物分支中,反之亦然,这表明 ST398 在动物和人类之间传播。总之,与牲畜相关的 MRSA ST398 已在中国医院引起严重感染,因此应引起更多关注和监测。

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