相似文献
1
Reconciling NMR Structures of the HIV-1 Nucleocapsid Protein NCp7 Using Extensive Polarizable Force Field Free-Energy Simulations.
J Chem Theory Comput. 2020 Apr 14;16(4):2013-2020. doi: 10.1021/acs.jctc.9b01204. Epub 2020 Mar 30.
2
Molecular dynamics and DFT study on HIV-1 nucleocapsid protein-7 in complex with viral genome.
J Chem Inf Model. 2010 Apr 26;50(4):638-50. doi: 10.1021/ci100070m.
3
Conformational behaviour of the active and inactive forms of the nucleocapsid NCp7 of HIV-1 studied by 1H NMR.
J Mol Biol. 1994 Jan 7;235(1):287-301. doi: 10.1016/s0022-2836(05)80033-6.
4
Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR.
EMBO J. 1992 Aug;11(8):3059-65. doi: 10.1002/j.1460-2075.1992.tb05377.x.
5
The human cellular protein NoL12 is a specific partner of the HIV-1 nucleocapsid protein NCp7.
J Virol. 2023 Sep 28;97(9):e0004023. doi: 10.1128/jvi.00040-23. Epub 2023 Sep 11.
6
1H NMR structure and biological studies of the His23-->Cys mutant nucleocapsid protein of HIV-1 indicate that the conformation of the first zinc finger is critical for virus infectivity.
Biochemistry. 1994 Oct 4;33(39):11707-16. doi: 10.1021/bi00205a006.
7
The Zinc Content of HIV-1 NCp7 Affects Its Selectivity for Packaging Signal and Affinity for Stem-Loop 3.
Viruses. 2021 Sep 24;13(10):1922. doi: 10.3390/v13101922.
8
Conformation and dynamics of the Gag polyprotein of the human immunodeficiency virus 1 studied by NMR spectroscopy.
Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3374-9. doi: 10.1073/pnas.1501985112. Epub 2015 Feb 23.
9
Structure of the zinc finger domain encompassing residues 13-51 of the nucleocapsid protein from simian immunodeficiency virus.
Biochem J. 2006 Feb 1;393(Pt 3):725-32. doi: 10.1042/BJ20051203.
10
Rotational dynamics of HIV-1 nucleocapsid protein NCp7 as probed by a spin label attached by peptide synthesis.
Biopolymers. 2008 Dec;89(12):1125-35. doi: 10.1002/bip.21064.
引用本文的文献
1
Backbone-mediated weakening of pairwise interactions enables percolation in peptide-based mimics of protein condensates.
Commun Chem. 2025 Apr 6;8(1):106. doi: 10.1038/s42004-025-01502-5.
2
Critical Evaluation of Polarizable and Nonpolarizable Force Fields for Proteins Using Experimentally Derived Nitrile Electric Fields.
J Am Chem Soc. 2024 Mar 13;146(10):6983-6991. doi: 10.1021/jacs.3c14775. Epub 2024 Feb 28.
3
High-resolution mining of the SARS-CoV-2 main protease conformational space: supercomputer-driven unsupervised adaptive sampling.
Chem Sci. 2021 Feb 2;12(13):4889-4907. doi: 10.1039/d1sc00145k.
4
Overview of the Nucleic-Acid Binding Properties of the HIV-1 Nucleocapsid Protein in Its Different Maturation States.
Viruses. 2020 Sep 29;12(10):1109. doi: 10.3390/v12101109.
5
Advances in Molecular Dynamics Simulations and Enhanced Sampling Methods for the Study of Protein Systems.
Int J Mol Sci. 2020 Sep 1;21(17):6339. doi: 10.3390/ijms21176339.
本文引用的文献
1
Accurate Biomolecular Simulations Account for Electronic Polarization.
Front Mol Biosci. 2019 Dec 4;6:143. doi: 10.3389/fmolb.2019.00143. eCollection 2019.
2
Massively Parallel Implementation of Steered Molecular Dynamics in Tinker-HP: Comparisons of Polarizable and Non-Polarizable Simulations of Realistic Systems.
J Chem Theory Comput. 2019 Jun 11;15(6):3694-3709. doi: 10.1021/acs.jctc.9b00199. Epub 2019 May 17.
3
Tinker 8: Software Tools for Molecular Design.
J Chem Theory Comput. 2018 Oct 9;14(10):5273-5289. doi: 10.1021/acs.jctc.8b00529. Epub 2018 Sep 19.
4
Tinker-HP: a massively parallel molecular dynamics package for multiscale simulations of large complex systems with advanced point dipole polarizable force fields.
Chem Sci. 2017 Nov 27;9(4):956-972. doi: 10.1039/c7sc04531j. eCollection 2018 Jan 28.
5
AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids.
J Chem Theory Comput. 2018 Apr 10;14(4):2084-2108. doi: 10.1021/acs.jctc.7b01169. Epub 2018 Mar 6.
6
All-atom empirical potential for molecular modeling and dynamics studies of proteins.
J Phys Chem B. 1998 Apr 30;102(18):3586-616. doi: 10.1021/jp973084f.
7
Polarizable Atomic Multipole-based Molecular Mechanics for Organic Molecules.
J Chem Theory Comput. 2011 Oct 11;7(10):3143-3161. doi: 10.1021/ct200304d.
8
Polarizable molecular dynamics simulation of Zn(II) in water using the AMOEBA force field.
J Chem Theory Comput. 2010 Jul 13;6(7):2059-2070. doi: 10.1021/ct100091j.
9
Current status of the AMOEBA polarizable force field.
J Phys Chem B. 2010 Mar 4;114(8):2549-64. doi: 10.1021/jp910674d.
10
Retroviral intasome assembly and inhibition of DNA strand transfer.
Nature. 2010 Mar 11;464(7286):232-6. doi: 10.1038/nature08784. Epub 2010 Jan 31.
Zotero 插件