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线粒体DNA(mtDNA)突变的检测

Detection of mitochondrial DNA (mtDNA) mutations.

作者信息

Naini Ali, Gilkerson Robert, Shanske Sara, Pang Jiuhong

机构信息

Laboratory of Personalized Genomic Medicine, Department of Pathology and Cell Biology, Columbia University, New York, NY, United States; Houston Merritt Clinical Research Center for Inherited Myopathies and Mitochondrial Diseases, Department of Neurology, Columbia University Medical Center, New York, NY, United States.

Departments of Biology and Clinical Laboratory Sciences, The University of Texas Rio Grande Valley, Edinburg, TX, United States.

出版信息

Methods Cell Biol. 2020;155:383-400. doi: 10.1016/bs.mcb.2019.11.009. Epub 2019 Dec 2.

DOI:10.1016/bs.mcb.2019.11.009
PMID:32183969
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7772943/
Abstract

The maternally inherited mitochondrial DNA (mtDNA) is a circular 16,569bp double stranded DNA that encodes 37 genes, 24 of which (2 rRNAs and 22 tRNAs) are necessary for transcription and translation of 13 polypeptides that are all subunits of respiratory chain. Pathogenic mutations in mtDNA cause respiratory chain dysfunction, and are the underlying defect in an ever-increasing number of mtDNA-related encephalomyopathies with distinct phenotypes. In this chapter, we present an overview of mtDNA mutations and describe the molecular techniques currently employed in our laboratory to detect two types of mtDNA mutations: single-large-scale rearrangements and point mutations.

摘要

母系遗传的线粒体DNA(mtDNA)是一种环状的16,569碱基对双链DNA,编码37个基因,其中24个基因(2个核糖体RNA和22个转运RNA)对于13种多肽的转录和翻译是必需的,这13种多肽均为呼吸链的亚基。mtDNA中的致病性突变会导致呼吸链功能障碍,并且是越来越多具有不同表型的线粒体DNA相关脑肌病的潜在缺陷。在本章中,我们概述了mtDNA突变,并描述了我们实验室目前用于检测两种类型mtDNA突变的分子技术:大规模单重排和点突变。

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Detection of mitochondrial DNA (mtDNA) mutations.线粒体DNA(mtDNA)突变的检测
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SnapShot: Mitochondrial Nucleoid.快照:线粒体类核。
Cell. 2018 Jan 11;172(1-2):388-388.e1. doi: 10.1016/j.cell.2017.12.039.
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Comprehensive Mitochondrial Genome Analysis by Massively Parallel Sequencing.通过大规模平行测序进行线粒体基因组综合分析
Methods Mol Biol. 2016;1351:3-17. doi: 10.1007/978-1-4939-3040-1_1.
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Comprehensive next-generation sequence analyses of the entire mitochondrial genome reveal new insights into the molecular diagnosis of mitochondrial DNA disorders.全面的新一代序列分析整个线粒体基因组揭示了新的见解到分子诊断的线粒体 DNA 疾病。
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Whole-Exome Sequencing Identifies a Novel POLG Frameshift Variant in an Adult Patient Presenting with Progressive External Ophthalmoplegia and Mitochondrial DNA Depletion.全外显子组测序在一名表现为进行性眼外肌麻痹和线粒体DNA耗竭的成年患者中鉴定出一种新的POLG移码变异。
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Clin Chem. 2012 Sep;58(9):1322-31. doi: 10.1373/clinchem.2011.181438. Epub 2012 Jul 9.
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Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction.超分辨荧光成像技术对线粒体核仁的研究揭示了其空间范围、限制因素和与膜的相互作用。
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Next generation sequencing to characterize mitochondrial genomic DNA heteroplasmy.用于表征线粒体基因组DNA异质性的下一代测序技术。
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Super-resolution microscopy reveals that mammalian mitochondrial nucleoids have a uniform size and frequently contain a single copy of mtDNA.超分辨率显微镜显示,哺乳动物线粒体的核体具有均匀的大小,并且通常包含单个 mtDNA 拷贝。
Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13534-9. doi: 10.1073/pnas.1109263108. Epub 2011 Aug 1.
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