• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

睡茄中 AP2/ERF 基因的计算机挖掘与功能分析。

In silico mining and functional analysis of AP2/ERF gene in Withania somnifera.

机构信息

Department of Metabolic and Structural Biology, CSIR-Central Institute of Medicinal and Aromatic Plants (CSIR-CIMAP), Lucknow, 226015, India.

Academy of Scientific and Innovative Research (AcSIR) (An Institution of National Importance by Act of Parliament), CSIR-HRDC Campus, Kamla Nehru Nagar, Sector-19, Ghaziabad, 201002, UP, India.

出版信息

Sci Rep. 2020 Mar 17;10(1):4877. doi: 10.1038/s41598-020-60090-7.

DOI:10.1038/s41598-020-60090-7
PMID:32184405
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7078187/
Abstract

Withania somnifera owing to its strong and remarkable stress tolerance property is a reliable candidate for the determination of genes involved in mechanism of adaption/tolerance of various stress conditions. 187 AP2/ERF gene related transcripts (GRTs) were identified during comprehensive search in W. somnifera transcriptome repertoire. Major hits in homology search were observed from the model plant Arabidopsis and members of Solanaceae family. Cloning, expression analysis of the gene and genetic transient transformation with the gene (WsAP2) were performed to predict its functional role in planta. Enhanced expression of some of the pathway genes for terpenoid biosynthesis was observed in transformed tissues in comparison to the control tissues. It is speculated that WsAP2 gene crucially regulates the expression of GGPPS gene in addition to the regulation of other important genes of terpenoid pathway via induction of expression of other genes such as HMGR, CAS, DXS and DXR. To the best of our knowledge, this is the first report representing detailed study of AP2/ERF gene family in W. somnifera. It is also suggested from the study that gene might have role in eliciting responses to combat stress and attribute the strong stress tolerant property associated with the plant.

摘要

睡茄由于其强大而显著的应激耐受特性,是确定参与各种应激条件适应/耐受机制的基因的可靠候选物。在对睡茄转录组库进行全面搜索时,鉴定出了 187 个 AP2/ERF 基因相关转录本 (GRT)。在同源性搜索中主要发现了来自模式植物拟南芥和茄科家族的成员。对基因进行了克隆、表达分析和基因的瞬时转化,以预测其在植物体内的功能作用。与对照组织相比,转化组织中萜类生物合成途径的一些基因表达增强。推测 WsAP2 基因除了通过诱导其他基因如 HMGR、CAS、DXS 和 DXR 的表达来调节萜类途径的其他重要基因的表达外,还能关键调控 GGPPS 基因的表达。据我们所知,这是首次在睡茄中对 AP2/ERF 基因家族进行详细研究的报告。该研究还表明,该基因可能在引发对抗应激的反应中发挥作用,并赋予与植物相关的强大应激耐受特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/e7000481dc20/41598_2020_60090_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/90b14a8de188/41598_2020_60090_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/00bcf83ba45b/41598_2020_60090_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/685ba699cb59/41598_2020_60090_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/5f07b2652d29/41598_2020_60090_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/218efb7e287f/41598_2020_60090_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/33dbd0871c28/41598_2020_60090_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/f767aad93d5d/41598_2020_60090_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/e98a031c9779/41598_2020_60090_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/e7000481dc20/41598_2020_60090_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/90b14a8de188/41598_2020_60090_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/00bcf83ba45b/41598_2020_60090_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/685ba699cb59/41598_2020_60090_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/5f07b2652d29/41598_2020_60090_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/218efb7e287f/41598_2020_60090_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/33dbd0871c28/41598_2020_60090_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/f767aad93d5d/41598_2020_60090_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/e98a031c9779/41598_2020_60090_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dc1/7078187/e7000481dc20/41598_2020_60090_Fig9_HTML.jpg

相似文献

1
In silico mining and functional analysis of AP2/ERF gene in Withania somnifera.睡茄中 AP2/ERF 基因的计算机挖掘与功能分析。
Sci Rep. 2020 Mar 17;10(1):4877. doi: 10.1038/s41598-020-60090-7.
2
A WRKY transcription factor from Withania somnifera regulates triterpenoid withanolide accumulation and biotic stress tolerance through modulation of phytosterol and defense pathways.茄科睡茄中的一个 WRKY 转录因子通过调节植物甾醇和防御途径来调控三萜类生物合成及与生物胁迫耐受性。
New Phytol. 2017 Aug;215(3):1115-1131. doi: 10.1111/nph.14663. Epub 2017 Jun 26.
3
Over-expression of DXS gene enhances terpenoidal secondary metabolite accumulation in rose-scented geranium and Withania somnifera: active involvement of plastid isoprenogenic pathway in their biosynthesis.DXS基因的过表达增强了香叶天竺葵和印度人参中萜类次生代谢产物的积累:质体异戊二烯生成途径在其生物合成中起积极作用。
Physiol Plant. 2017 Apr;159(4):381-400. doi: 10.1111/ppl.12507. Epub 2016 Oct 25.
4
Transcription factor repertoire in Ashwagandha (Withania somnifera) through analytics of transcriptomic resources: Insights into regulation of development and withanolide metabolism.通过分析转录组资源鉴定睡茄(印度人参)中的转录因子库:对发育和醉茄内酯代谢调控的研究。
Sci Rep. 2017 Nov 30;7(1):16649. doi: 10.1038/s41598-017-14657-6.
5
RNAi and Homologous Over-Expression Based Functional Approaches Reveal Triterpenoid Synthase Gene-Cycloartenol Synthase Is Involved in Downstream Withanolide Biosynthesis in Withania somnifera.基于RNA干扰和同源过表达的功能研究方法揭示了三萜合酶基因——环阿屯醇合酶参与了睡茄中下游睡茄内酯生物合成过程。
PLoS One. 2016 Feb 26;11(2):e0149691. doi: 10.1371/journal.pone.0149691. eCollection 2016.
6
Comprehensive assessment of the genes involved in withanolide biosynthesis from Withania somnifera: chemotype-specific and elicitor-responsive expression.来自印度人参中与睡茄内酯生物合成相关基因的综合评估:化学型特异性和诱导子响应表达。
Funct Integr Genomics. 2017 Jul;17(4):477-490. doi: 10.1007/s10142-017-0548-x. Epub 2017 Mar 11.
7
WRKY1-mediated regulation of tryptophan decarboxylase in tryptamine generation for withanamide production in Withania somnifera (Ashwagandha).WRKY1 介导的色氨酸脱羧酶调控在印度萝芙木(睡茄)中生成瓦伦西亚茄胺的色胺生成中的作用。
Plant Cell Rep. 2020 Nov;39(11):1443-1465. doi: 10.1007/s00299-020-02574-4. Epub 2020 Aug 12.
8
Virus-Induced Silencing of Key Genes Leads to Differential Impact on Withanolide Biosynthesis in the Medicinal Plant, Withania somnifera.病毒诱导的关键基因沉默导致药用植物睡茄中乌索烷型生物合成的差异影响。
Plant Cell Physiol. 2018 Feb 1;59(2):262-274. doi: 10.1093/pcp/pcx179.
9
Berry transcriptome: insights into a novel resource to understand development dependent secondary metabolism in Withania somnifera (Ashwagandha).贝瑞转录组:深入了解与开发依赖型次生代谢相关的新型资源,以了解睡茄(印度人参)。
Physiol Plant. 2020 Jan;168(1):148-173. doi: 10.1111/ppl.12943. Epub 2019 Jun 11.
10
Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera.不同化学型的比较转录组分析阐明了药用植物睡茄中茄内酯的生物合成途径。
Sci Rep. 2015 Dec 21;5:18611. doi: 10.1038/srep18611.

引用本文的文献

1
Comparative Time Series RNA-seq Analysis of Pigeonpea Root Tissues in Response to Infection.木豆根组织对感染反应的比较时间序列RNA测序分析
Front Fungal Biol. 2021 May 17;2:664953. doi: 10.3389/ffunb.2021.664953. eCollection 2021.
2
Pharmaceutical, food potential, and molecular data of Gomes: a systematic review.戈麦斯的药物、食品潜力及分子数据:一项系统综述。
Genet Resour Crop Evol. 2022;69(2):525-543. doi: 10.1007/s10722-021-01319-w. Epub 2022 Jan 18.
3
Identification of miRNA-mRNA Regulatory Modules Involved in Lipid Metabolism and Seed Development in a Woody Oil Tree ().

本文引用的文献

1
Genome-wide analysis of the AP2/ERF family in Musa species reveals divergence and neofunctionalisation during evolution.香蕉属植物AP2/ERF家族的全基因组分析揭示了其在进化过程中的分化和新功能化。
Sci Rep. 2016 Jan 6;6:18878. doi: 10.1038/srep18878.
2
De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway.黄花苜蓿的从头转录组分析揭示了非生物胁迫响应途径潜在机制的新见解。
BMC Genomics. 2015 Oct 19;16:818. doi: 10.1186/s12864-015-2019-x.
3
Transcriptome-based discovery of AP2/ERF transcription factors related to temperature stress in tea plant (Camellia sinensis).
鉴定与木本油料树的脂代谢和种子发育相关的 miRNA-mRNA 调控模块()。
Cells. 2021 Dec 27;11(1):71. doi: 10.3390/cells11010071.
4
Genome-wide identification and expression analysis of ethylene responsive factor family transcription factors in ....中乙烯响应因子家族转录因子的全基因组鉴定与表达分析
PeerJ. 2021 Nov 19;9:e12429. doi: 10.7717/peerj.12429. eCollection 2021.
5
Protein Elicitor EsxA Induces Resistance to Seedling Blight and PR Genes Differential Transcription in Rice.蛋白激发子EsxA诱导水稻对白叶枯病的抗性及病程相关基因的差异转录
Rice (N Y). 2021 Nov 4;14(1):91. doi: 10.1186/s12284-021-00532-6.
基于转录组学发现茶树中与温度胁迫相关的AP2/ERF转录因子
Funct Integr Genomics. 2015 Nov;15(6):741-52. doi: 10.1007/s10142-015-0457-9. Epub 2015 Aug 2.
4
To grow old: regulatory role of ethylene and jasmonic acid in senescence.衰老:乙烯和茉莉酸在衰老过程中的调控作用。
Front Plant Sci. 2015 Jan 29;6:20. doi: 10.3389/fpls.2015.00020. eCollection 2015.
5
Isolation, classification and transcription profiles of the AP2/ERF transcription factor superfamily in citrus.柑橘中AP2/ERF转录因子超家族的分离、分类及转录谱分析
Mol Biol Rep. 2014 Jul;41(7):4261-71. doi: 10.1007/s11033-014-3297-0. Epub 2014 Feb 25.
6
Analysis of Brassica napus ESTs: gene discovery and expression patterns of AP2/ERF-family transcription factors.甘蓝型油菜 EST 分析:AP2/ERF 家族转录因子的基因发现和表达模式。
Mol Biol Rep. 2014 Jan;41(1):45-56. doi: 10.1007/s11033-013-2836-4. Epub 2013 Nov 2.
7
Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing.利用 RNA 测序鉴定巴西橡胶树的 AP2/ERF 超家族。
BMC Genomics. 2013 Jan 16;14:30. doi: 10.1186/1471-2164-14-30.
8
The jasmonate-responsive AP2/ERF transcription factors AaERF1 and AaERF2 positively regulate artemisinin biosynthesis in Artemisia annua L.茉莉酸响应的 AP2/ERF 转录因子 AaERF1 和 AaERF2 正向调控黄花蒿 Artemisia annua L. 中的青蒿素生物合成。
Mol Plant. 2012 Mar;5(2):353-65. doi: 10.1093/mp/ssr087. Epub 2011 Nov 20.
9
Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes.甘蓝型油菜 EST 分析:AP2/ERF 家族基因的发现和表达模式。
Mol Biol Rep. 2010 Jun;37(5):2485-92. doi: 10.1007/s11033-009-9763-4. Epub 2009 Aug 23.
10
Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.).大豆(Glycine max L.)中ERF基因家族的系统发育、基因结构及表达模式
J Exp Bot. 2008;59(15):4095-107. doi: 10.1093/jxb/ern248. Epub 2008 Oct 1.