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高通量测序检测散发性脑动静脉畸形发病机制中可能的新型基因破坏变异体

High-Throughput Sequencing to Detect Novel Likely Gene-Disrupting Variants in Pathogenesis of Sporadic Brain Arteriovenous Malformations.

作者信息

Scimone Concetta, Donato Luigi, Alafaci Concetta, Granata Francesca, Rinaldi Carmela, Longo Marcello, D'Angelo Rosalia, Sidoti Antonina

机构信息

Department of Biomedical and Dental Science and of Morphological and Functional Images, University of Messina, Messina, Italy.

Department of Vanguard Medicine and Therapies, Biomolecular Strategies and Neuroscience, I.E.ME.S.T., Palermo, Italy.

出版信息

Front Genet. 2020 Feb 28;11:146. doi: 10.3389/fgene.2020.00146. eCollection 2020.

Abstract

Molecular signaling that leads to brain arteriovenous malformation (bAVM) is to date elusive and this is firstly due to the low frequency of familial cases. Conversely, sporadic bAVM is the most diffuse condition and represents the main source to characterize the genetic basis of the disease. Several studies were conducted in order to detect both germ-line and somatic mutations linked to bAVM development and, in this context, next generation sequencing technologies offer a pivotal resource for the amount of outputted information. We performed whole exome sequencing on a young boy affected by sporadic bAVM. Paired-end sequencing was conducted on an Illumina platform and filtered variants were validated by Sanger sequencing. We detected 20 likely gene-disrupting variants affecting as many loci. Of these variants, 11 are inherited novel variants and one is a nonsense variant, affecting gene. Moreover, we also considered rare known variants affecting loci involved in vascular differentiation. In order to explain their possible involvement in bAVM pathogenesis, we analyzed molecular networks at Cytoscape platform. In this study we focus on some genetic point variations detected in a child affected by bAVM. Therefore, we suggest these novel affected loci as prioritized for further investigation on pathogenesis of bAVM lesions.

摘要

迄今为止,导致脑动静脉畸形(bAVM)的分子信号传导尚不清楚,这首先是由于家族性病例的发生率较低。相反,散发性bAVM是最普遍的情况,也是确定该疾病遗传基础的主要来源。为了检测与bAVM发展相关的种系和体细胞突变,已经进行了多项研究,在这种情况下,下一代测序技术为大量输出信息提供了关键资源。我们对一名患有散发性bAVM的小男孩进行了全外显子组测序。在Illumina平台上进行双端测序,并通过Sanger测序验证筛选出的变异。我们检测到20个可能破坏基因的变异,影响了同样数量的基因座。在这些变异中,11个是新发现的遗传变异,1个是无义变异,影响 基因。此外,我们还考虑了影响参与血管分化的基因座的罕见已知变异。为了解释它们可能参与bAVM发病机制,我们在Cytoscape平台上分析了分子网络。在本研究中,我们关注在一名患有bAVM的儿童中检测到的一些基因点变异。因此,我们建议将这些新发现的受影响基因座作为进一步研究bAVM病变发病机制的优先对象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/712f/7059193/89cc8225e746/fgene-11-00146-g001.jpg

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