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利用单细胞转录组学定义皮肤稳态和伤口愈合过程中的表皮基底细胞状态。

Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics.

机构信息

Department of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA.

Department of Mathematics, University of California, Irvine, CA 92697, USA.

出版信息

Cell Rep. 2020 Mar 17;30(11):3932-3947.e6. doi: 10.1016/j.celrep.2020.02.091.


DOI:10.1016/j.celrep.2020.02.091
PMID:32187560
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7218802/
Abstract

Our knowledge of transcriptional heterogeneities in epithelial stem and progenitor cell compartments is limited. Epidermal basal cells sustain cutaneous tissue maintenance and drive wound healing. Previous studies have probed basal cell heterogeneity in stem and progenitor potential, but a comprehensive dissection of basal cell dynamics during differentiation is lacking. Using single-cell RNA sequencing coupled with RNAScope and fluorescence lifetime imaging, we identify three non-proliferative and one proliferative basal cell state in homeostatic skin that differ in metabolic preference and become spatially partitioned during wound re-epithelialization. Pseudotemporal trajectory and RNA velocity analyses predict a quasi-linear differentiation hierarchy where basal cells progress from Col17a1/Trp63 state to early-response state, proliferate at the juncture of these two states, or become growth arrested before differentiating into spinous cells. Wound healing induces plasticity manifested by dynamic basal-spinous interconversions at multiple basal transcriptional states. Our study provides a systematic view of epidermal cellular dynamics, supporting a revised "hierarchical-lineage" model of homeostasis.

摘要

我们对上皮干细胞和祖细胞区室中转录异质性的了解有限。表皮基底细胞维持皮肤组织的维持并驱动伤口愈合。先前的研究已经探测到基底细胞在干细胞和祖细胞潜能上的异质性,但缺乏对分化过程中基底细胞动力学的全面剖析。通过单细胞 RNA 测序结合 RNAScope 和荧光寿命成像,我们在稳态皮肤中鉴定出三种非增殖性和一种增殖性基底细胞状态,它们在代谢偏好上存在差异,并在伤口再上皮化过程中发生空间分隔。拟时轨迹和 RNA 速度分析预测了一个准线性分化层次结构,其中基底细胞从 Col17a1/Trp63 状态进展到早期反应状态,在这两个状态的交界处增殖,或者在分化为棘细胞之前停止生长。伤口愈合诱导了由多个基底转录状态的基底-棘突相互转化表现出的可塑性。我们的研究提供了对表皮细胞动力学的系统观察,支持对稳态的“分层谱系”模型的修正。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/e524c8de60f4/nihms-1578466-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/1f77caa39557/nihms-1578466-f0002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/000b3be0758e/nihms-1578466-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/ef2c8ad8eae7/nihms-1578466-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/d3a57fb61e99/nihms-1578466-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/a0335f158e78/nihms-1578466-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/e524c8de60f4/nihms-1578466-f0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/1f77caa39557/nihms-1578466-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/918d4e8ce928/nihms-1578466-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/000b3be0758e/nihms-1578466-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/ef2c8ad8eae7/nihms-1578466-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/d3a57fb61e99/nihms-1578466-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/a0335f158e78/nihms-1578466-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6833/7218802/e524c8de60f4/nihms-1578466-f0008.jpg

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本文引用的文献

[1]
Stem cell competition orchestrates skin homeostasis and ageing.

Nature. 2019-4-3

[2]
The single-cell transcriptional landscape of mammalian organogenesis.

Nature. 2019-2-20

[3]
TFAP2C- and p63-Dependent Networks Sequentially Rearrange Chromatin Landscapes to Drive Human Epidermal Lineage Commitment.

Cell Stem Cell. 2019-1-24

[4]
Single-Cell Transcriptomics Characterizes Cell Types in the Subventricular Zone and Uncovers Molecular Defects Impairing Adult Neurogenesis.

Cell Rep. 2018-11-27

[5]
In vivo multiphoton microscopy detects longitudinal metabolic changes associated with delayed skin wound healing.

Commun Biol. 2018-11-19

[6]
Collagen density modulates triple-negative breast cancer cell metabolism through adhesion-mediated contractility.

Sci Rep. 2018-11-20

[7]
Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment.

Nat Genet. 2018-11-5

[8]
Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.

Cell Rep. 2018-10-23

[9]
Single-Cell Transcriptomics of Traced Epidermal and Hair Follicle Stem Cells Reveals Rapid Adaptations during Wound Healing.

Cell Rep. 2018-10-16

[10]
The adult human testis transcriptional cell atlas.

Cell Res. 2018-10-12

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