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开发全球图像特征分析模型以预测癌症风险和预后。

Developing global image feature analysis models to predict cancer risk and prognosis.

作者信息

Zheng Bin, Qiu Yuchen, Aghaei Faranak, Mirniaharikandehei Seyedehnafiseh, Heidari Morteza, Danala Gopichandh

机构信息

School of Electrical and Computer Engineering, University of Oklahoma, 101 David L. Boren Blvd, Suite 1001, Norman, OK 73019 USA.

出版信息

Vis Comput Ind Biomed Art. 2019;2(1):17. doi: 10.1186/s42492-019-0026-5. Epub 2019 Nov 19.

DOI:10.1186/s42492-019-0026-5
PMID:32190407
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7055572/
Abstract

In order to develop precision or personalized medicine, identifying new quantitative imaging markers and building machine learning models to predict cancer risk and prognosis has been attracting broad research interest recently. Most of these research approaches use the similar concepts of the conventional computer-aided detection schemes of medical images, which include steps in detecting and segmenting suspicious regions or tumors, followed by training machine learning models based on the fusion of multiple image features computed from the segmented regions or tumors. However, due to the heterogeneity and boundary fuzziness of the suspicious regions or tumors, segmenting subtle regions is often difficult and unreliable. Additionally, ignoring global and/or background parenchymal tissue characteristics may also be a limitation of the conventional approaches. In our recent studies, we investigated the feasibility of developing new computer-aided schemes implemented with the machine learning models that are trained by global image features to predict cancer risk and prognosis. We trained and tested several models using images obtained from full-field digital mammography, magnetic resonance imaging, and computed tomography of breast, lung, and ovarian cancers. Study results showed that many of these new models yielded higher performance than other approaches used in current clinical practice. Furthermore, the computed global image features also contain complementary information from the features computed from the segmented regions or tumors in predicting cancer prognosis. Therefore, the global image features can be used alone to develop new case-based prediction models or can be added to current tumor-based models to increase their discriminatory power.

摘要

为了开发精准医学或个性化医学,识别新的定量成像标志物并构建机器学习模型来预测癌症风险和预后,近来已引起广泛的研究兴趣。这些研究方法大多采用与医学图像传统计算机辅助检测方案类似的概念,其中包括检测和分割可疑区域或肿瘤的步骤,随后基于从分割区域或肿瘤计算出的多个图像特征融合来训练机器学习模型。然而,由于可疑区域或肿瘤的异质性和边界模糊性,分割细微区域往往困难且不可靠。此外,忽略全局和/或背景实质组织特征也可能是传统方法的一个局限。在我们最近的研究中,我们探讨了开发新的计算机辅助方案的可行性,该方案采用通过全局图像特征训练的机器学习模型来预测癌症风险和预后。我们使用从全视野数字乳腺摄影、磁共振成像以及乳腺癌、肺癌和卵巢癌的计算机断层扫描获得的图像训练和测试了多个模型。研究结果表明,这些新模型中的许多在性能上优于当前临床实践中使用的其他方法。此外,计算出的全局图像特征在预测癌症预后方面也包含来自分割区域或肿瘤计算出的特征的补充信息。因此,全局图像特征可单独用于开发新的基于病例的预测模型,或可添加到当前基于肿瘤的模型中以提高其鉴别能力。

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本文引用的文献

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Comput Methods Programs Biomed. 2019 Oct;179:104995. doi: 10.1016/j.cmpb.2019.104995. Epub 2019 Jul 29.
2
Measurements of adiposity as prognostic biomarkers for survival with anti-angiogenic treatment in epithelial ovarian cancer: An NRG Oncology/Gynecologic Oncology Group ancillary data analysis of GOG 218.肥胖指标作为抗血管生成治疗上皮性卵巢癌患者生存预后的生物标志物:NRG 肿瘤学/GOG 妇科肿瘤学组 GOG 218 的辅助数据分析。
Gynecol Oncol. 2019 Oct;155(1):69-74. doi: 10.1016/j.ygyno.2019.07.020. Epub 2019 Aug 10.
3
Developing a Quantitative Ultrasound Image Feature Analysis Scheme to Assess Tumor Treatment Efficacy Using a Mouse Model.
开发一种定量超声图像特征分析方案,使用小鼠模型评估肿瘤治疗效果。
Sci Rep. 2019 May 13;9(1):7293. doi: 10.1038/s41598-019-43847-7.
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Expert knowledge-infused deep learning for automatic lung nodule detection.基于专家知识的深度学习在肺结节自动检测中的应用。
J Xray Sci Technol. 2019;27(1):17-35. doi: 10.3233/XST-180426.
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Fusion of quantitative imaging features and serum biomarkers to improve performance of computer-aided diagnosis scheme for lung cancer: A preliminary study.融合定量成像特征和血清生物标志物以提高肺癌计算机辅助诊断方案的性能:一项初步研究。
Med Phys. 2018 Dec;45(12):5472-5481. doi: 10.1002/mp.13237. Epub 2018 Nov 8.
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SD-CNN: A shallow-deep CNN for improved breast cancer diagnosis.SD-CNN:一种用于改善乳腺癌诊断的浅层-深层 CNN
Comput Med Imaging Graph. 2018 Dec;70:53-62. doi: 10.1016/j.compmedimag.2018.09.004. Epub 2018 Sep 22.
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Performance evaluation of breast cancer diagnosis with mammography, ultrasonography and magnetic resonance imaging.乳腺摄影、超声和磁共振成像在乳腺癌诊断中的性能评估。
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