Haydari Zainab, Shams Hengameh, Jahed Zeinab, Mofrad Mohammad R K
Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, California.
Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, California; Molecular Biophysics and Integrative Bioimaging Division, Lawrence Berkeley National Lab, Berkeley, California.
Biophys J. 2020 Apr 21;118(8):1977-1991. doi: 10.1016/j.bpj.2020.02.023. Epub 2020 Mar 3.
Integrin αIIbβ3 is a predominant type of integrin abundantly expressed on the surface of platelets and its activation regulates the process of thrombosis. Talin and kindlin are cytoplasmic proteins that bind to integrin and modulate its affinity for extracellular ligands. Although the molecular details of talin-mediated integrin activation are known, the mechanism of kindlin involvement in this process remains elusive. Here, we demonstrate that the interplay between talin and kindlin promotes integrin activation. Our all-atomic molecular dynamics simulations on complete transmembrane and cytoplasmic domains of integrin αIIbβ3, talin1 F2/F3 subdomains, and the kindlin2 FERM domain in an explicit lipid-water environment over a microsecond timescale unraveled the role of kindlin as an enhancer of the talin interaction with the membrane proximal region of β-integrin. The cooperation of kindlin with talin results in a complete disruption of salt bridges between R995 on αIIb and D723/E726 on β3. Furthermore, kindlin modifies the molecular mechanisms of inside-out activation by decreasing the crossing angle between transmembrane helices of integrin αIIbβ3, which eventually results in parallelization of integrin dimer. In addition, our control simulation featuring integrin in complex with kindlin reveals that kindlin binding is not sufficient for unclasping the inner-membrane and outer-membrane interactions of integrin dimer, thus ruling out the possibility of solitary action of kindlin in integrin activation.
整合素αIIbβ3是一种主要的整合素类型,在血小板表面大量表达,其激活调节血栓形成过程。踝蛋白和纽带蛋白是与整合素结合并调节其对细胞外配体亲和力的胞质蛋白。尽管踝蛋白介导的整合素激活的分子细节已为人所知,但纽带蛋白参与这一过程的机制仍不清楚。在这里,我们证明了踝蛋白和纽带蛋白之间的相互作用促进了整合素的激活。我们在微秒时间尺度上对整合素αIIbβ3的完整跨膜和胞质结构域、踝蛋白1的F2/F3亚结构域以及纽带蛋白2的FERM结构域在明确的脂质-水环境中进行的全原子分子动力学模拟,揭示了纽带蛋白作为增强踝蛋白与β-整合素膜近端区域相互作用的增强剂的作用。纽带蛋白与踝蛋白的协同作用导致αIIb上的R995与β3上的D723/E726之间的盐桥完全断裂。此外,纽带蛋白通过减小整合素αIIbβ3跨膜螺旋之间的交叉角度来改变由内向外激活的分子机制,最终导致整合素二聚体平行化。此外,我们以整合素与纽带蛋白复合物为特征的对照模拟表明,纽带蛋白的结合不足以解开整合素二聚体的内膜和外膜相互作用,从而排除了纽带蛋白在整合素激活中单独作用的可能性。