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基于种群遗传分析和古物种分布建模的东北亚施氏日本壁虎()的遗传多样性及推断的扩散历史

Genetic diversity and inferred dispersal history of the Schlegel's Japanese Gecko () in Northeast Asia based on population genetic analyses and paleo-species distribution modelling.

作者信息

Kim Jong-Sun, Park Jaejin, Fong Jonathan J, Zhang Yong-Pu, Li Shu-Ran, Ota Hidetoshi, Min Sung-Hun, Min Mi-Sook, Park Daesik

机构信息

Division of Science Education, Kangwon National University, Chuncheon, Republic of Korea.

Science Unit, Lingnan University, Hong Kong, PR China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2020 Apr;31(3):120-130. doi: 10.1080/24701394.2020.1742332. Epub 2020 Mar 26.

Abstract

To understand the genetic diversity and dispersal history of Schlegel's Japanese gecko (), we performed genetic analyses and paleo-species distributional modelling. For the genetic analysis, we analyzed mitochondrial DNA (mtDNA) (cytochrome b [] and NADH dehydrogenase 2 []) and seven microsatellite loci of 353 individuals from 11 populations (2 east coast China, 4 west and central coast Japan and 5 Korea). For the paleo-species distribution modelling, we used 432 occurrence data points (125 China, 291 Japan and 16 Korea) over the Pleistocene and Holocene. China is inferred to be the source population, which had higher genetic diversity (mtDNA) and more private alleles (mtDNA) compared to Japanese and Korean populations. Differences between the three counties were very small in the mtDNA haplotype network despite some genetic structure among the three countries. Microsatellite analysis inferred that genetic exchange has actively occurred among the Chinese, Japanese and Korean populations. Suitable habitats in Japan should have been plentiful by the mid-Holocene, but have only recently become available in Korea. These results suggest that dispersal of occurred after the Holocene warming from the east coast of China to the west and central coasts of Japan and Korea, and gene flow is actively occurring among the three countries.

摘要

为了解李氏壁虎()的遗传多样性和扩散历史,我们进行了遗传分析和古物种分布建模。对于遗传分析,我们分析了来自11个种群(中国东部沿海2个、日本西部和中部沿海4个、韩国5个)的353个个体的线粒体DNA(mtDNA)(细胞色素b[]和烟酰胺腺嘌呤二核苷酸脱氢酶2[])以及7个微卫星位点。对于古物种分布建模,我们使用了更新世和全新世期间的432个出现数据点(中国125个、日本291个、韩国16个)。推断中国是源种群,与日本和韩国种群相比,中国种群具有更高的遗传多样性(mtDNA)和更多的私有等位基因(mtDNA)。尽管三国之间存在一些遗传结构,但在mtDNA单倍型网络中,三国之间的差异非常小。微卫星分析推断,中国、日本和韩国种群之间曾积极发生遗传交换。到全新世中期,日本应该有丰富的适宜栖息地,但韩国只是最近才有适宜栖息地。这些结果表明,李氏壁虎在全新世变暖后从中国东海岸扩散到日本和韩国的西海岸及中部海岸,并且三国之间正在积极发生基因流动。

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