Sun Shengming, Wu Ying, Ge Xianping, Jakovlić Ivan, Zhu Jian, Mahboob Shahid, Al-Ghanim Khalid Abdullah, Al-Misned Fahad, Fu Hongtuo
Wuxi Fisheries College, Nanjing Agricultural University, Wuxi 214081, People's Republic of China.
Agriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Zhejiang Institute of Freshwater Fisheries, Huzhou 313001, People's Republic of China.
R Soc Open Sci. 2020 Jan 8;7(1):190669. doi: 10.1098/rsos.190669. eCollection 2020 Jan.
We hypothesized that the mitogenome of (GL), native to the Qinghai-Tibet Plateau, might exhibit genetic adaptations to the extreme environmental conditions associated with high altitudes (greater than 3000 m). To test this, we also sequenced the mitogenome of (GP), whose native range is close to the Tibetan plateau, but at a much lower altitude (200-1500 m). The two mitogenomes exhibited conserved mitochondrial architecture, but low identity between genes (55% to 76.1% ). Standard (homogeneous) phylogenetic models resolved Gammaridae as paraphyletic, but 'heterogeneous' CAT-GTR model as monophyletic. In indirect support of our working hypothesis, GL, GP and exhibit evidence of episodic diversifying selection within the studied Gammaroidea dataset. The mitogenome of GL generally evolves under a strong purifying selection, whereas GP evolves under directional (especially pronounced in ) and/or relaxed selection. This is surprising, as GP does not inhabit a unique ecological niche compared to other gammarids. We propose that this rapid evolution of the GP mitogenome may be a reflection of its relatively recent speciation and heightened non-adaptive (putatively metabolic rate-driven) mutational pressures. To test these hypotheses, we urge sequencing mitogenomes of remaining species populating the same geographical range as GP.
我们推测,原产于青藏高原的[某种生物名称(GL)]的线粒体基因组可能表现出对与高海拔(大于3000米)相关的极端环境条件的遗传适应性。为了验证这一点,我们还对[另一种生物名称(GP)]的线粒体基因组进行了测序,其原生范围靠近青藏高原,但海拔要低得多(200 - 1500米)。这两个线粒体基因组表现出保守的线粒体结构,但基因之间的同一性较低(55%至76.1%)。标准(同质)系统发育模型将钩虾科解析为并系群,但“异质”的CAT - GTR模型将其解析为单系群。作为对我们工作假设的间接支持,GL、GP和[某种生物名称]在研究的钩虾总科数据集中表现出间歇性多样化选择的证据。GL的线粒体基因组通常在强烈的纯化选择下进化,而GP则在定向选择(在[某种生物名称]中尤为明显)和/或宽松选择下进化。这很令人惊讶,因为与其他钩虾相比,GP并没有占据独特的生态位。我们认为,GP线粒体基因组的这种快速进化可能反映了其相对较新的物种形成以及增强的非适应性(推测由代谢率驱动)突变压力。为了验证这些假设,我们敦促对与GP分布在相同地理范围内的其余[某种生物名称]物种的线粒体基因组进行测序。