Department of Biochemistry and Molecular Biology, University of Chicago, 929 East 57th Street, Chicago, IL 60637, United States of America.
Center for Proteomics and Department of Pharmacology, Case Western Reserve University, Cleveland, OH 44106, United States of America.
Biochim Biophys Acta Gen Subj. 2020 Jul;1864(7):129604. doi: 10.1016/j.bbagen.2020.129604. Epub 2020 Mar 26.
A combination of small angle X-ray scattering (SAXS) and molecular dynamics (MD) simulations based on a coarse grained model is used to examine the effect of glycine substitutions in the short connector between the SH3 and SH2 domains of Hck, a member of the Src-family kinases. It has been shown previously that the activity of cSrc kinase is upregulated by substitution of 3 residues by glycine in the SH3-SH2 connector. Here, analysis of SAXS data indicates that the population of Hck in the disassembled state increases from 25% in the wild type kinase to 76% in the glycine mutant. This is consistent with the results of free energy perturbation calculations showing that the mutation in the connector shifts the equilibrium from the assembled to the disassembled state. This study supports the notion that the SH3-SH2 connector helps to regulate the activity of tyrosine kinases by shifting the population of the active state of the multidomain protein independent of C-terminal phosphorylation.
采用基于粗粒度模型的小角 X 射线散射 (SAXS) 和分子动力学 (MD) 模拟的组合,研究了甘氨酸取代 Hck(Src 家族激酶的成员)的 SH3 和 SH2 结构域之间短连接区对其的影响。先前已经表明,Src 激酶的活性通过在 SH3-SH2 连接区取代 3 个残基的甘氨酸而被上调。在这里,对 SAXS 数据的分析表明,在去组装状态下,Hck 的种群从野生型激酶中的 25%增加到甘氨酸突变体中的 76%。这与自由能微扰计算的结果一致,表明连接区的突变将平衡从组装态转移到去组装态。这项研究支持了这样一种观点,即 SH3-SH2 连接区通过将多结构域蛋白的活性状态的种群独立于 C 端磷酸化转移来帮助调节酪氨酸激酶的活性。