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铁是 SecA 样金属结合结构域的配体。

Iron is a ligand of SecA-like metal-binding domains .

机构信息

School of Biosciences, University of Birmingham, Birmingham B15 2TT, United Kingdom.

Institute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B15 2TT, United Kingdom.

出版信息

J Biol Chem. 2020 May 22;295(21):7516-7528. doi: 10.1074/jbc.RA120.012611. Epub 2020 Apr 2.

Abstract

The ATPase SecA is an essential component of the bacterial Sec machinery, which transports proteins across the cytoplasmic membrane. Most SecA proteins contain a long C-terminal tail (CTT). In , the CTT contains a structurally flexible linker domain and a small metal-binding domain (MBD). The MBD coordinates zinc via a conserved cysteine-containing motif and binds to SecB and ribosomes. In this study, we screened a high-density transposon library for mutants that affect the susceptibility of to sodium azide, which inhibits SecA-mediated translocation. Results from sequencing this library suggested that mutations removing the CTT make less susceptible to sodium azide at subinhibitory concentrations. Copurification experiments suggested that the MBD binds to iron and that azide disrupts iron binding. Azide also disrupted binding of SecA to membranes. Two other proteins that contain SecA-like MBDs, YecA and YchJ, also copurified with iron, and NMR spectroscopy experiments indicated that YecA binds iron via its MBD. Competition experiments and equilibrium binding measurements indicated that the SecA MBD binds preferentially to iron and that a conserved serine is required for this specificity. Finally, structural modeling suggested a plausible model for the octahedral coordination of iron. Taken together, our results suggest that SecA-like MBDs likely bind to iron .

摘要

ATPase SecA 是细菌 Sec 机制的一个必需组成部分,该机制将蛋白质穿过细胞质膜运输。大多数 SecA 蛋白含有长的 C 端尾巴(CTT)。在 中,CTT 包含一个结构上灵活的连接域和一个小的金属结合域(MBD)。MBD 通过保守的含半胱氨酸的基序协调锌,并与 SecB 和核糖体结合。在这项研究中,我们筛选了一个高密度转座子文库,以寻找影响 对叠氮化钠敏感性的突变体,叠氮化钠抑制 SecA 介导的易位。对该文库进行测序的结果表明,去除 CTT 的突变使 在亚抑制浓度下对叠氮化钠的敏感性降低。共纯化实验表明,MBD 结合铁,而叠氮化钠破坏铁结合。叠氮化钠也破坏了 SecA 与膜的结合。另外两种含有 SecA 样 MBD 的 蛋白,YecA 和 YchJ,也与铁共纯化,NMR 光谱实验表明 YecA 通过其 MBD 结合铁。竞争实验和平衡结合测量表明,SecA MBD 优先结合铁,并且保守的丝氨酸是这种特异性所必需的。最后,结构建模提出了铁的八面体配位的合理模型。总之,我们的结果表明,SecA 样 MBD 可能结合铁 。

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