Suppr超能文献

一项过表达实验并不支持“避免毒性决定蛋白质进化速率”这一假说。

An Overexpression Experiment Does Not Support the Hypothesis That Avoidance of Toxicity Determines the Rate of Protein Evolution.

作者信息

Biesiadecka Magdalena K, Sliwa Piotr, Tomala Katarzyna, Korona Ryszard

机构信息

Department of Genetics, Faculty of Biotechnology, University of Rzeszów, Poland.

Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Cracow, Poland.

出版信息

Genome Biol Evol. 2020 May 1;12(5):589-596. doi: 10.1093/gbe/evaa067.

Abstract

The misfolding avoidance hypothesis postulates that sequence mutations render proteins cytotoxic and therefore the higher the gene expression, the stronger the operation of selection against substitutions. This translates into prediction that relative toxicity of extant proteins is higher for those evolving faster. In the present experiment, we selected pairs of yeast genes which were paralogous but evolving at different rates. We expressed them artificially to high levels. We expected that toxicity would be higher for ones bearing more mutations, especially that overcrowding should rather exacerbate than reverse the already existing differences in misfolding rates. We did find that the applied mode of overexpression caused a considerable decrease in fitness and that the decrease was proportional to the amount of excessive protein. However, it was not higher for proteins which are normally expressed at lower levels (and have less conserved sequence). This result was obtained consistently, regardless whether the rate of growth or ability to compete in common cultures was used as a proxy for fitness. In additional experiments, we applied factors that reduce accuracy of translation or enhance structural instability of proteins. It did not change a consistent pattern of independence between the fitness cost caused by overexpression of a protein and the rate of its sequence evolution.

摘要

避免错误折叠假说假定,序列突变会使蛋白质具有细胞毒性,因此基因表达水平越高,针对替换的选择作用就越强。这转化为一个预测,即现存蛋白质中进化速度较快的那些相对毒性更高。在本实验中,我们选择了成对的酵母基因,它们是旁系同源基因,但进化速率不同。我们将它们人工高表达。我们预期,携带更多突变的基因毒性会更高,尤其是过度表达应该会加剧而非扭转已存在的错误折叠率差异。我们确实发现,所应用的过表达模式导致了适应性的显著下降,且这种下降与过量蛋白质的量成正比。然而,对于正常表达水平较低(且序列保守性较低)的蛋白质,其毒性并不更高。无论使用生长速率还是在共培养中的竞争能力作为适应性的指标,都一致得到了这个结果。在额外的实验中,我们应用了降低翻译准确性或增强蛋白质结构不稳定性的因素。这并没有改变蛋白质过表达导致的适应性成本与其序列进化速率之间一致的独立模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1888/7250497/ea60b0b84380/evaa067f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验