Gulseren Gulcihan, Khalily Mohammad Aref, Tekinay Ayse B, Guler Mustafa O
Institute of Materials Science and Nanotechnology, National Nanotechnology Research Center (UNAM), Bilkent University, Ankara, 06800, Turkey.
J Mater Chem B. 2016 Jul 14;4(26):4605-4611. doi: 10.1039/c6tb00795c. Epub 2016 Jun 20.
Essential amino acids in catalytic sites of native enzymes are important in nature inspired catalyst designs. Active sites of enzymes contain the coordinated assembly of multiple amino acids, and catalytic action is generated by the dynamic interactions among multiple residues. However, catalysis studies are limited by the complex and dynamic structure of the enzyme; and it is difficult to exclusively attribute a given function to a specific residue. Minimalistic approaches involving artificial catalytic sites are promising for the investigation of the enzyme function in the absence of non-essential protein components, and self-assembling peptide nanostructures are especially advantageous in this context. Here we demonstrate the design and characterization of an enzyme-mimetic catalytic nanosystem presenting essential residues (Ser, His, Asp). The function of each residue and its combinations on the nanostructures in hydrolysis reaction was studied. The catalytic self-assembled nanostructures were used for efficient ester hydrolysis such as a model substrate (pNPA) and a natural substrate (acetylcholine) highlighting the key role of self-assembly in catalytic domain formation to test the efficiency of the de novo designed catalyst as a catalytic triad model.
天然酶催化位点中的必需氨基酸在受自然启发的催化剂设计中具有重要意义。酶的活性位点包含多个氨基酸的协同组装,催化作用由多个残基之间的动态相互作用产生。然而,催化研究受到酶复杂且动态结构的限制;很难将特定功能完全归因于某个特定残基。涉及人工催化位点的简约方法对于在不存在非必需蛋白质成分的情况下研究酶功能很有前景,在这种情况下,自组装肽纳米结构尤其具有优势。在此,我们展示了一种呈现必需残基(丝氨酸、组氨酸、天冬氨酸)的模拟酶催化纳米系统的设计与表征。研究了每个残基及其在纳米结构上的组合在水解反应中的功能。催化自组装纳米结构用于高效酯水解,如模型底物(对硝基苯乙酸酯)和天然底物(乙酰胆碱),突出了自组装在催化域形成中的关键作用,以测试从头设计的催化剂作为催化三联体模型的效率。