• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

组织稳态中细胞谱系的随机动力学

STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS.

作者信息

Qiu Yuchi, Chen Weitao, Nie Qing

机构信息

Department of Mathematics, University of California, Irvine Irvine, CA 92697, USA.

Department of Mathematics, University of California, Riverside Riverside, CA 92507, USA.

出版信息

Discrete Continuous Dyn Syst Ser B. 2019 Aug;24(8):3971-3994. doi: 10.3934/dcdsb.2018339.

DOI:10.3934/dcdsb.2018339
PMID:32269502
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7141575/
Abstract

During epithelium tissue maintenance, lineages of cells differentiate and proliferate in a coordinated way to provide the desirable size and spatial organization of different types of cells. While mathematical models through deterministic description have been used to dissect role of feedback regulations on tissue layer size and stratification, how the stochastic effects influence tissue maintenance remains largely unknown. Here we present a stochastic continuum model for cell lineages to investigate how both layer thickness and layer stratification are affected by noise. We find that the cell-intrinsic noise often causes reduction and oscillation of layer size whereas the cell-extrinsic noise increases the thickness, and sometimes, leads to uncontrollable growth of the tissue layer. The layer stratification usually deteriorates as the noise level increases in the cell lineage systems. Interestingly, the morphogen noise, which mixes both cell-intrinsic noise and cell-extrinsic noise, can lead to larger size of layer with little impact on the layer stratification. By investigating different combinations of the three types of noise, we find the layer thickness variability is reduced when cell-extrinsic noise level is high or morphogen noise level is low. Interestingly, there exists a tradeoff between low thickness variability and strong layer stratification due to competition among the three types of noise, suggesting robust layer homeostasis requires balanced levels of different types of noise in the cell lineage systems.

摘要

在上皮组织维持过程中,细胞谱系以协调的方式分化和增殖,以提供不同类型细胞所需的大小和空间组织。虽然通过确定性描述的数学模型已被用于剖析反馈调节对组织层大小和分层的作用,但随机效应如何影响组织维持在很大程度上仍不清楚。在这里,我们提出了一个细胞谱系的随机连续模型,以研究层厚度和层分层如何受到噪声的影响。我们发现,细胞内在噪声通常会导致层大小的减小和振荡,而细胞外在噪声会增加厚度,有时还会导致组织层的不可控生长。在细胞谱系系统中,随着噪声水平的增加,层分层通常会恶化。有趣的是,混合了细胞内在噪声和细胞外在噪声的形态发生素噪声可以导致更大的层大小,而对层分层影响很小。通过研究三种类型噪声的不同组合,我们发现当细胞外在噪声水平高或形态发生素噪声水平低时,层厚度变异性会降低。有趣的是,由于三种类型噪声之间的竞争,在低厚度变异性和强层分层之间存在权衡,这表明强大的层稳态需要细胞谱系系统中不同类型噪声的平衡水平。

相似文献

1
STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS.组织稳态中细胞谱系的随机动力学
Discrete Continuous Dyn Syst Ser B. 2019 Aug;24(8):3971-3994. doi: 10.3934/dcdsb.2018339.
2
Noise-induced dynamics in the mixed-feedback-loop network motif.混合反馈回路网络基序中的噪声诱导动力学。
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan;77(1 Pt 1):011903. doi: 10.1103/PhysRevE.77.011903. Epub 2008 Jan 7.
3
Modeling heterogeneous responsiveness of intrinsic apoptosis pathway.模拟内源性凋亡途径的异质性反应。
BMC Syst Biol. 2013 Jul 23;7:65. doi: 10.1186/1752-0509-7-65.
4
Intrinsic and extrinsic noise of gene expression in lineage trees.谱系树中基因表达的内在和外在噪声。
Sci Rep. 2019 Jan 24;9(1):474. doi: 10.1038/s41598-018-35927-x.
5
Quantifying intrinsic and extrinsic variability in stochastic gene expression models.量化随机基因表达模型中的固有和外在变异性。
PLoS One. 2013 Dec 31;8(12):e84301. doi: 10.1371/journal.pone.0084301. eCollection 2013.
6
Intrinsic Noise Profoundly Alters the Dynamics and Steady State of Morphogen-Controlled Bistable Genetic Switches.内在噪声深刻改变形态发生素控制的双稳态遗传开关的动力学和稳态。
PLoS Comput Biol. 2016 Oct 21;12(10):e1005154. doi: 10.1371/journal.pcbi.1005154. eCollection 2016 Oct.
7
Multiscale modeling of layer formation in epidermis.表皮层形成的多尺度建模。
PLoS Comput Biol. 2018 Feb 26;14(2):e1006006. doi: 10.1371/journal.pcbi.1006006. eCollection 2018 Feb.
8
On the attenuation and amplification of molecular noise in genetic regulatory networks.论遗传调控网络中分子噪声的衰减与放大
BMC Bioinformatics. 2006 Feb 2;7:52. doi: 10.1186/1471-2105-7-52.
9
Coordination of gene expression noise with cell size: analytical results for agent-based models of growing cell populations.基因表达噪声与细胞大小的协调:生长细胞群体基于主体模型的分析结果
J R Soc Interface. 2021 May;18(178):20210274. doi: 10.1098/rsif.2021.0274. Epub 2021 May 26.
10
Modeling cell-to-cell stochastic variability in intrinsic apoptosis pathway.模拟细胞内在凋亡途径中的细胞间随机变异性。
Annu Int Conf IEEE Eng Med Biol Soc. 2012;2012:5498-501. doi: 10.1109/EMBC.2012.6347239.

引用本文的文献

1
Optimal noise level for coding with tightly balanced networks of spiking neurons in the presence of transmission delays.在存在传输延迟的情况下,用紧密平衡的神经元网络进行编码的最优噪声水平。
PLoS Comput Biol. 2022 Oct 17;18(10):e1010593. doi: 10.1371/journal.pcbi.1010593. eCollection 2022 Oct.
2
Multiple morphogens and rapid elongation promote segmental patterning during development.多种形态发生素和快速伸长促进了发育过程中的节段模式形成。
PLoS Comput Biol. 2021 Jun 23;17(6):e1009077. doi: 10.1371/journal.pcbi.1009077. eCollection 2021 Jun.

本文引用的文献

1
Mean-Independent Noise Control of Cell Fates via Intermediate States.通过中间状态实现细胞命运的均值独立噪声控制
iScience. 2018 May 25;3:11-20. doi: 10.1016/j.isci.2018.04.002. Epub 2018 Apr 11.
2
Multiscale modeling of layer formation in epidermis.表皮层形成的多尺度建模。
PLoS Comput Biol. 2018 Feb 26;14(2):e1006006. doi: 10.1371/journal.pcbi.1006006. eCollection 2018 Feb.
3
Organ size control via hydraulically gated oscillations.通过液压门控振荡实现器官大小控制
Development. 2017 Dec 1;144(23):4422-4427. doi: 10.1242/dev.153056.
4
Cell Sorting and Noise-Induced Cell Plasticity Coordinate to Sharpen Boundaries between Gene Expression Domains.细胞分选与噪声诱导的细胞可塑性协同作用以锐化基因表达域之间的边界。
PLoS Comput Biol. 2017 Jan 30;13(1):e1005307. doi: 10.1371/journal.pcbi.1005307. eCollection 2017 Jan.
5
Diverse feather shape evolution enabled by coupling anisotropic signalling modules with self-organizing branching programme.不同羽毛形状的进化是通过将各向异性信号模块与自组织分支程序相结合而实现的。
Nat Commun. 2017 Jan 20;8:ncomms14139. doi: 10.1038/ncomms14139.
6
Stochastic phenotype transition of a single cell in an intermediate region of gene state switching.基因状态转换中间区域单个细胞的随机表型转变。
Phys Rev Lett. 2015 Feb 20;114(7):078101. doi: 10.1103/PhysRevLett.114.078101. Epub 2015 Feb 17.
7
Modeling digits. Digit patterning is controlled by a Bmp-Sox9-Wnt Turing network modulated by morphogen gradients.建模数字。数字模式由 Bmp-Sox9-Wnt Turing 网络控制,该网络受形态发生梯度调制。
Science. 2014 Aug 1;345(6196):566-70. doi: 10.1126/science.1252960.
8
Numerical Methods for Two-Dimensional Stem Cell Tissue Growth.二维干细胞组织生长的数值方法
J Sci Comput. 2014;58(1):149-175. doi: 10.1007/s10915-013-9728-6. Epub 2013 May 25.
9
Stem cell niche structure as an inherent cause of undulating epithelial morphologies.干细胞壁龛结构作为上皮形态波动的内在原因。
Biophys J. 2013 Jan 8;104(1):237-46. doi: 10.1016/j.bpj.2012.11.3807.
10
Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain.噪声驱动斑马鱼后脑基因表达边界的精细化。
Mol Syst Biol. 2012;8:613. doi: 10.1038/msb.2012.45.