温度依赖性产色素粘质沙雷氏菌ATCC 274的全基因组序列
Complete Genome Sequence of Temperature-Dependent Pigment-Producing Serratia marcescens ATCC 274.
作者信息
Yabe Suzuka, Fukushima Jun
机构信息
Department of Biotechnology, Akita Prefectural University, Akita City, Japan.
Department of Biotechnology, Akita Prefectural University, Akita City, Japan
出版信息
Microbiol Resour Announc. 2020 Apr 9;9(15):e00164-20. doi: 10.1128/MRA.00164-20.
Abstract
ATCC 274 produces the red pigment prodigiosin and the biosurfactant serrawettin W1 at 30°C but not at 37°C. A complete, high-quality genome sequence of ATCC 274 was obtained and found to comprise a single 5,148,533-bp circular genome with 4,799 genes.
摘要
ATCC 274在30°C时可产生红色色素灵菌红素和生物表面活性剂serratwetting W1，但在37°C时则不会产生。已获得ATCC 274完整、高质量的基因组序列，发现其包含一个由5,148,533个碱基对组成的单环基因组，有4,799个基因。
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本文引用的文献
1
fastp: an ultra-fast all-in-one FASTQ preprocessor.
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
2
NanoPack: visualizing and processing long-read sequencing data.
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
3
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
4
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
5
Bandage: interactive visualization of de novo genome assemblies.
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.
6
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
7
The biosynthesis and regulation of bacterial prodiginines.
Nat Rev Microbiol. 2006 Dec;4(12):887-99. doi: 10.1038/nrmicro1531.
8
Transcriptional downregulator hexS controlling prodigiosin and serrawettin W1 biosynthesis in Serratia marcescens.
Microbiol Immunol. 2006;50(8):587-96. doi: 10.1111/j.1348-0421.2006.tb03833.x.
9
Serratia marcescens gene required for surfactant serrawettin W1 production encodes putative aminolipid synthetase belonging to nonribosomal peptide synthetase family.
Microbiol Immunol. 2005;49(4):303-10. doi: 10.1111/j.1348-0421.2005.tb03734.x.
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