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()-10-炔丙基-吡咯并-[2,1-][1,4]苯并二氮杂卓-5,11-二酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究

Crystal structure, Hirshfeld surface analysis and inter-action energy and DFT studies of ()-10-propargyl-pyrrolo-[2,1-][1,4]benzodiazepine-5,11-dione.

作者信息

Jeroundi Dounia, Mazzah Ahmed, Hökelek Tuncer, El Hadrami El Mestafa, Renard Catherine, Haoudi Amal, Essassi El Mokhtar

机构信息

Laboratory of Applied Organic Chemistry, Sidi Mohamed Ben Abdellah University, Faculty of Sciences and Techniques, Road Immouzer, BP 2202 Fez, Morocco.

USR 3290 Miniaturisation pour l'analyse, la synthèse et la protéomique, 59655, Villeneuve d'Ascq Cedex, Université Lille1, France.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Mar 3;76(Pt 4):467-472. doi: 10.1107/S2056989020002698. eCollection 2020 Apr 1.

DOI:10.1107/S2056989020002698
PMID:32280485
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7133028/
Abstract

The title compound, CHNO, consists of pyrrole and benzodiazepine units linked to a propargyl moiety, where the pyrrole and diazepine rings adopt half-chair and boat conformations, respectively. The absolute configuration was assigned on the the basis of l-proline, which was used in the synthesis of benzodiazepine. In the crystal, weak C-H⋯O and C-H⋯O (Bnz = benzene, Diazp = diazepine and Proprg = proparg-yl) hydrogen bonds link the mol-ecules into two-dimensional networks parallel to the plane, enclosing (28) ring motifs, with the networks forming oblique stacks along the -axis direction. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (49.8%), H⋯C/C⋯H (25.7%) and H⋯O/O⋯H (20.1%) inter-actions. Hydrogen bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, C-H⋯O hydrogen-bond energies are 38.8 (for C-H⋯O) and 27.1 (for C-H⋯O) kJ mol. Density functional theory (DFT) optimized structures at the B3LYP/6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap.

摘要

标题化合物CHNO由与炔丙基部分相连的吡咯和苯并二氮杂䓬单元组成,其中吡咯环和二氮杂䓬环分别呈半椅式和船式构象。绝对构型是根据用于合成苯并二氮杂䓬的L-脯氨酸确定的。在晶体中,弱的C-H⋯O和C-H⋯O(Bnz = 苯,Diazp = 二氮杂䓬,Proprg = 炔丙基)氢键将分子连接成平行于平面的二维网络,包围着(28)环基序,这些网络沿轴方向形成倾斜堆积。晶体结构的 Hirshfeld 表面分析表明,对晶体堆积最重要的贡献来自H⋯H(49.8%)、H⋯C/C⋯H(25.7%)和H⋯O/O⋯H(20.1%)相互作用。氢键和范德华相互作用是晶体堆积中的主要相互作用。计算化学表明,在晶体中,C-H⋯O氢键能为38.8(对于C-H⋯O)和27.1(对于C-H⋯O)kJ·mol。在B3LYP/6-311 G(d,p)水平上对密度泛函理论(DFT)优化的结构与实验测定的固态分子结构进行了比较。阐明了HOMO-LUMO行为以确定能隙。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/13a0ba49fb45/e-76-00467-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/0e2caab7ea62/e-76-00467-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/e82722e058bc/e-76-00467-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/fc65b3a26d1f/e-76-00467-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/68848113ac05/e-76-00467-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/0258e1234f9b/e-76-00467-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/fc6b186cf04a/e-76-00467-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/605d33cc1280/e-76-00467-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/13a0ba49fb45/e-76-00467-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/0e2caab7ea62/e-76-00467-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/e82722e058bc/e-76-00467-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/fc65b3a26d1f/e-76-00467-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/68848113ac05/e-76-00467-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/0258e1234f9b/e-76-00467-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/fc6b186cf04a/e-76-00467-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/605d33cc1280/e-76-00467-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edb2/7133028/13a0ba49fb45/e-76-00467-fig8.jpg

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