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氨基酸疏水性数据的温度依赖性与互补(正义和反义)肽相互作用的遗传编码算法有关。

The temperature dependence of amino acid hydrophobicity data is related to the genetic coding algorithm for complementary (sense and antisense) peptide interactions.

作者信息

Štambuk Nikola, Konjevoda Paško

机构信息

Centre for Nuclear Magnetic Resonance, Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia.

Laboratory for Epigenomics, Division of Molecular Medicine, Ruđer Bošković Institute, Bijenička cesta 54, HR-10000 Zagreb, Croatia.

出版信息

Data Brief. 2020 Mar 7;30:105392. doi: 10.1016/j.dib.2020.105392. eCollection 2020 Jun.

Abstract

We present the data concerning the clustering of sense and antisense amino acid pairs into polar, nonpolar and neutral groups, as measured using hydrophobicity parameter-logarithmic equilibrium constants (Log K)-at 25 °C and 100 °C (Wolfenden et al., 2015). The Log K, values, of the complementary amino acid pairs are strongly correlated to the central (2nd) purine base of the mRNA codon and the complementary pyrimidine base of the tRNA anticodon. Clustering of amino acids is temperature independent with regard to the direction of translation (3' → 5' or 5' → 3'). The Log K discriminate between artificial Hecht α- and β-protein datasets at 25 °C and 100 °C. Interpretation of this data may be found in the research article entitled "Determining amino acid scores of the genetic code table: complementarity, structure, function and evolution" (Štambuk and Konjevoda, 2020).

摘要

我们展示了关于有义氨基酸对和反义氨基酸对聚集成极性、非极性和中性组的数据,这些数据是在25°C和100°C下使用疏水性参数——对数平衡常数(Log K)测量得到的(沃尔芬登等人,2015年)。互补氨基酸对的Log K值与mRNA密码子的中心(第2个)嘌呤碱基和tRNA反密码子的互补嘧啶碱基密切相关。氨基酸的聚类与翻译方向(3'→5'或5'→3')无关,不受温度影响。Log K在25°C和100°C下能够区分人工的赫希特α-蛋白数据集和β-蛋白数据集。关于这些数据的解读可在题为《确定遗传密码表的氨基酸分数:互补性、结构、功能和进化》的研究文章中找到(斯坦布克和科涅沃达,2020年)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3112/7138962/6ad532e78dec/gr1.jpg

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