Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
National Microbiology Laboratory-CSCHAH, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.
Int J Syst Evol Microbiol. 2020 May;70(5):3167-3178. doi: 10.1099/ijsem.0.004150.
The (HACEK) group genus contained a single species, for many years. In November 2019, was described after recovery from a brain abscess and blood culture in Norway. Coincidentally, characterization of 22 Gram-negative bacteria resembling from 17 Canadian patients had been underway. Seven isolates from five patients were conclusively identifiable as . One (NML 120819) was deemed to represent a species of the genus most closely related to . Fourteen isolates had 97.6 to 98.8% similarities to by 16S rRNA gene sequencing, forming three distinct groups by genome analyses. The largest contained ten anaerobic isolates from eight patients recovered from blood, brain, bone and other abscesses; upon re-evaluation, this group was found to be most consistent with . A second facultatively anaerobic clade consisted of two ocular isolates from one patient and a sinus isolate from a second patient. The third taxon consisted of a single strictly anaerobic blood culture isolate. The novel taxa, like , were poorly reactive biochemically and difficult to discern from each other phenotypically and chemotaxonomically, including by cellular fatty acids. MALDI-TOF (Bruker) and whole-genome sequencing were used to further characterize isolates. Draft genomes for the strains had similar DNA G+C contents (55.38-58.53 mol%) while sizes varied from 1.82 Mb to 2.54 Mb. We propose here emendations of the genus and the species , as well as describing sp. nov. NML 130454 (=LMG 30894=NCTC 14180) and sp. nov. NML 02-A-017 (=LMG 30896=NCTC 14179), on the basis of these findings.
多年来,(HACEK)组属中仅包含单一物种 。2019 年 11 月,在挪威从脑脓肿和血培养中分离出 后对其进行了描述。巧合的是,对来自 17 名加拿大患者的 22 株类似 的革兰氏阴性细菌的特征描述也在同时进行。从 5 名患者中分离出的 7 株分离物可明确鉴定为 。其中一株(NML 120819)被认为是与 属中最密切相关的物种。通过 16S rRNA 基因测序,14 株分离物与 的相似度为 97.6%至 98.8%,通过基因组分析形成了三个不同的组。最大的一组包含 10 株来自 8 名患者的厌氧分离物,从血液、大脑、骨骼和其他脓肿中分离出来;重新评估后,发现该组与 最一致。第二个兼性厌氧枝系由来自一名患者的两个眼部分离物和来自另一名患者的鼻窦分离物组成。第三个分类单元由一个严格厌氧的血培养分离物组成。与 一样,新型分类群在生化上反应不佳,在表型和化学分类上难以区分彼此,包括通过细胞脂肪酸。MALDI-TOF(布鲁克)和全基因组测序用于进一步表征分离物。这些菌株的基因组草图具有相似的 DNA G+C 含量(55.38-58.53 mol%),而大小则从 1.82 Mb 到 2.54 Mb 不等。基于这些发现,我们在此提出了对 属和 种的修正,以及描述了 sp. nov. NML 130454(=LMG 30894=NCTC 14180)和 sp. nov. NML 02-A-017(=LMG 30896=NCTC 14179)。