Schulte Tim, Sala Benedetta Maria, Nilvebrant Johan, Nygren Per-Åke, Achour Adnane, Shernyukov Andrey, Agback Tatiana, Agback Peter
Science for Life Laboratory, Department of Medicine, Solna, Karolinska Institute, and Division of Infectious Diseases, Karolinska University Hospital, SE-171 76, Stockholm, Sweden.
Division of Protein Engineering, Department of Protein Science, School of Engineering Sciences in Chemistry, Biotechnology and Health, AlbaNova University Center, Royal Institute of Technology, and Science for Life Laboratory, SE-100 44, Stockholm, Sweden.
Biomol NMR Assign. 2020 Oct;14(2):195-200. doi: 10.1007/s12104-020-09944-9. Epub 2020 Apr 20.
The pneumococcal serine rich repeat protein (PsrP) is displayed on the surface of Streptococcus pneumoniae with a suggested role in colonization in the human upper respiratory tract. Full-length PsrP is a 4000 residue-long multi-domain protein comprising a positively charged functional binding region (BR) domain for interaction with keratin and extracellular DNA during pneumococcal adhesion and biofilm formation, respectively. The previously determined crystal structure of the BR domain revealed a flat compressed barrel comprising two sides with an extended β-sheet on one side, and another β-sheet that is distorted by loops and β-turns on the other side. Crystallographic B-factors indicated a relatively high mobility of loop regions that were hypothesized to be important for binding. Furthermore, the crystal structure revealed an inter-molecular β-sheet formed between edge strands of two symmetry-related molecules, which could promote bacterial aggregation during biofilm formation. Here we report the near complete N/C/H backbone resonance assignment of the BR domain of PsrP, revealing a secondary structure profile that is almost identical to the X-ray structure. Dynamic N-T, T and NOE data suggest a monomeric and rigid structure of BR with disordered residues only at the N- and C-termini. The presented peak assignment will allow us to identify BR residues that are crucial for ligand binding.
肺炎球菌富含丝氨酸重复蛋白(PsrP)展示在肺炎链球菌表面,推测其在人类上呼吸道定殖中发挥作用。全长PsrP是一种由4000个残基组成的多结构域蛋白,包含一个带正电荷的功能性结合区域(BR)结构域,分别在肺炎球菌黏附和生物膜形成过程中与角蛋白和细胞外DNA相互作用。先前确定的BR结构域晶体结构显示为一个扁平压缩桶状,一侧有一个延伸的β折叠片,另一侧有一个被环和β转角扭曲的β折叠片。晶体学B因子表明环区域具有相对较高的流动性,推测这些环区域对于结合很重要。此外,晶体结构显示在两个对称相关分子的边缘链之间形成了一个分子间β折叠片,这可能在生物膜形成过程中促进细菌聚集。在此,我们报告了PsrP的BR结构域几乎完整的N/C/H主链共振归属,揭示了一个与X射线结构几乎相同的二级结构概况。动态N-T、T和NOE数据表明BR具有单体且刚性的结构,仅在N端和C端存在无序残基。所呈现的峰归属将使我们能够识别对配体结合至关重要的BR残基。