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肺炎球菌富含丝氨酸重复蛋白(PsrP-BR)配体结合区域结构域的指定核磁共振主链共振显示,溶液中的单体呈刚性。

Assigned NMR backbone resonances of the ligand-binding region domain of the pneumococcal serine-rich repeat protein (PsrP-BR) reveal a rigid monomer in solution.

作者信息

Schulte Tim, Sala Benedetta Maria, Nilvebrant Johan, Nygren Per-Åke, Achour Adnane, Shernyukov Andrey, Agback Tatiana, Agback Peter

机构信息

Science for Life Laboratory, Department of Medicine, Solna, Karolinska Institute, and Division of Infectious Diseases, Karolinska University Hospital, SE-171 76, Stockholm, Sweden.

Division of Protein Engineering, Department of Protein Science, School of Engineering Sciences in Chemistry, Biotechnology and Health, AlbaNova University Center, Royal Institute of Technology, and Science for Life Laboratory, SE-100 44, Stockholm, Sweden.

出版信息

Biomol NMR Assign. 2020 Oct;14(2):195-200. doi: 10.1007/s12104-020-09944-9. Epub 2020 Apr 20.

DOI:10.1007/s12104-020-09944-9
PMID:32314099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7462905/
Abstract

The pneumococcal serine rich repeat protein (PsrP) is displayed on the surface of Streptococcus pneumoniae with a suggested role in colonization in the human upper respiratory tract. Full-length PsrP is a 4000 residue-long multi-domain protein comprising a positively charged functional binding region (BR) domain for interaction with keratin and extracellular DNA during pneumococcal adhesion and biofilm formation, respectively. The previously determined crystal structure of the BR domain revealed a flat compressed barrel comprising two sides with an extended β-sheet on one side, and another β-sheet that is distorted by loops and β-turns on the other side. Crystallographic B-factors indicated a relatively high mobility of loop regions that were hypothesized to be important for binding. Furthermore, the crystal structure revealed an inter-molecular β-sheet formed between edge strands of two symmetry-related molecules, which could promote bacterial aggregation during biofilm formation. Here we report the near complete N/C/H backbone resonance assignment of the BR domain of PsrP, revealing a secondary structure profile that is almost identical to the X-ray structure. Dynamic N-T, T and NOE data suggest a monomeric and rigid structure of BR with disordered residues only at the N- and C-termini. The presented peak assignment will allow us to identify BR residues that are crucial for ligand binding.

摘要

肺炎球菌富含丝氨酸重复蛋白(PsrP)展示在肺炎链球菌表面,推测其在人类上呼吸道定殖中发挥作用。全长PsrP是一种由4000个残基组成的多结构域蛋白,包含一个带正电荷的功能性结合区域(BR)结构域,分别在肺炎球菌黏附和生物膜形成过程中与角蛋白和细胞外DNA相互作用。先前确定的BR结构域晶体结构显示为一个扁平压缩桶状,一侧有一个延伸的β折叠片,另一侧有一个被环和β转角扭曲的β折叠片。晶体学B因子表明环区域具有相对较高的流动性,推测这些环区域对于结合很重要。此外,晶体结构显示在两个对称相关分子的边缘链之间形成了一个分子间β折叠片,这可能在生物膜形成过程中促进细菌聚集。在此,我们报告了PsrP的BR结构域几乎完整的N/C/H主链共振归属,揭示了一个与X射线结构几乎相同的二级结构概况。动态N-T、T和NOE数据表明BR具有单体且刚性的结构,仅在N端和C端存在无序残基。所呈现的峰归属将使我们能够识别对配体结合至关重要的BR残基。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db38/7462905/d440e8331ba4/12104_2020_9944_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db38/7462905/f17659e37108/12104_2020_9944_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db38/7462905/d440e8331ba4/12104_2020_9944_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db38/7462905/f17659e37108/12104_2020_9944_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/db38/7462905/d440e8331ba4/12104_2020_9944_Fig2_HTML.jpg

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本文引用的文献

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Structural characterization and biological function of bivalent binding of CD2AP to intrinsically disordered domain of chikungunya virus nsP3 protein.结构表征和 CD2AP 二价结合到基性无序域的 chikungunya 病毒 nsP3 蛋白的生物学功能。
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病原体黏附素极端机械稳定性的分子机制。
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The BR domain of PsrP interacts with extracellular DNA to promote bacterial aggregation; structural insights into pneumococcal biofilm formation.PsrP 的 BR 结构域与细胞外 DNA 相互作用,促进细菌聚集;对肺炎链球菌生物膜形成的结构见解。
Sci Rep. 2016 Sep 1;6:32371. doi: 10.1038/srep32371.
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Backbone Assignment of the MALT1 Paracaspase by Solution NMR.通过溶液核磁共振对MALT1副胱天蛋白酶进行主链归属
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CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts.CSI 3.0:一个利用核磁共振化学位移识别蛋白质二级和超二级结构的网络服务器。
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The binding force of the staphylococcal adhesin SdrG is remarkably strong.葡萄球菌粘附素SdrG的结合力非常强。
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Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus.黏附、侵袭和逃逸:金黄色葡萄球菌表面蛋白的多种功能。
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