Salas Antonio, Schönherr Sebastian, Bandelt Hans-Jürgen, Gómez-Carballa Alberto, Weissensteiner Hansi
Unidade de Xenética, Instituto de Ciencias Forenses, Facultade de Medicina, Universidade de Santiago de Compostela, and GenPoB Research Group, Instituto de Investigaciones Sanitarias (IDIS), Hospital Clínico Universitario de Santiago (SERGAS), Galicia, Spain.
Institute of Genetic Epidemiology, Department of Genetics and Pharmacology, Medical University of Innsbruck, Innsbruck, 6020, Austria.
Forensic Sci Int Genet. 2020 Jul;47:102274. doi: 10.1016/j.fsigen.2020.102274. Epub 2020 Mar 12.
A breakthrough article published in PNAS by Luo et al. challenges a central dogma in biology which states that the mitochondrial DNA (mtDNA) in humans is inherited exclusively from the mother. We re-analyzed original FASTQ files and results reported by Luo et al. to investigate methodological issues (e.g. nuclear mitochondrial DNA or NUMTs, DNA rearrangements) that could lead to biological misinterpretations. A comprehensive analysis of their data reveals several methodological and analytical issues that must be carefully addressed before challenging the current paradigm. We first show that the probability of the findings described by the authors is extremely small (most likely below 10). The sequencing replicates from the same donors show aberrations in the variants detected that need further investigation to exclude contributions from other sources or methodological artifacts. Applying the principle of reductio ad absurdum, we demonstrate that the nuclear factor invoked by the authors to explain the phenomenon would need to be extraordinarily complex and precise to preclude linear accumulation of mtDNA lineages across generations, which would make the appearance of mixed haplotypes a much more frequent event in the population. We discuss alternate scenarios that explain findings of the same nature as reported by Luo et al., in the context of in-vitro fertilization and therapeutic mtDNA replacement ooplasmic transplantation.
罗等人发表在《美国国家科学院院刊》上的一篇突破性文章对生物学中的一个核心教条提出了挑战,该教条认为人类线粒体DNA(mtDNA)仅从母亲那里遗传。我们重新分析了罗等人报告的原始FASTQ文件和结果,以调查可能导致生物学误解的方法学问题(如核线粒体DNA或NUMTs、DNA重排)。对他们数据的全面分析揭示了几个方法学和分析问题,在挑战当前范式之前必须仔细解决。我们首先表明,作者所描述的发现的概率极小(很可能低于10)。来自相同供体的测序重复在检测到的变异中显示出异常,需要进一步调查以排除其他来源或方法学假象的影响。运用反证法,我们证明作者用来解释该现象的核因子需要极其复杂和精确,才能排除mtDNA谱系在几代人之间的线性积累,这将使混合单倍型在人群中出现的频率更高。我们在体外受精和治疗性mtDNA替代卵质移植的背景下,讨论了解释与罗等人报告的相同性质发现的其他情况。