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MAPPS:后基因组时代代谢途径预测和网络分析的一个基于网络的工具。

MAPPS: A Web-Based Tool for Metabolic Pathway Prediction and Network Analysis in the Postgenomic Era.

机构信息

Department of Biology, Syed Babar Ali School of Science and Engineering, Lahore University of Management Sciences (LUMS), DHA, Lahore 54792, Pakistan.

Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, U.K.

出版信息

ACS Synth Biol. 2020 May 15;9(5):1069-1082. doi: 10.1021/acssynbio.9b00397. Epub 2020 Apr 29.

Abstract

Comparative and evolutionary analyses of metabolic networks have a wide range of applications, ranging from research into metabolic evolution through to practical applications in drug development, synthetic biology, and biodegradation. We present MAPPS: Metabolic network Analysis and Pathway Prediction Server (https://mapps.lums.edu.pk), a web-based tool to study functions and evolution of metabolic networks using traditional and 'omics data sets. MAPPS provides diverse functionalities including an interactive interface, graphical visualization of results, pathway prediction and network comparison, identification of potential drug targets, metabolic engineering, host-microbe interactions, and ancestral network building. Importantly, MAPPS also allows users to upload custom data, thus enabling metabolic analyses on draft and custom genomes, and has an 'omics pipeline to filter pathway results, making it relevant in today's postgenomic era.

摘要

代谢网络的比较和进化分析具有广泛的应用,从代谢进化研究到药物开发、合成生物学和生物降解的实际应用。我们介绍了 MAPPS:代谢网络分析和途径预测服务器(https://mapps.lums.edu.pk),这是一个基于网络的工具,用于使用传统和“组学”数据集研究代谢网络的功能和进化。MAPPS 提供了多种功能,包括交互式界面、结果的图形可视化、途径预测和网络比较、潜在药物靶点的识别、代谢工程、宿主-微生物相互作用和祖先网络构建。重要的是,MAPPS 还允许用户上传自定义数据,从而能够在草稿和自定义基因组上进行代谢分析,并具有“组学”管道来过滤途径结果,使其在当今的后基因组时代具有相关性。

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