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基于公共数据库挖掘的宫颈癌和宫颈内膜腺癌(CESC)新型生物标志物。

The New Biomarker for Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Based on Public Database Mining.

机构信息

Department of Gynecology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.

Central Laboratory, Renmin hospital, Wuhan University, 430006, China.

出版信息

Biomed Res Int. 2020 Apr 12;2020:5478574. doi: 10.1155/2020/5478574. eCollection 2020.

Abstract

To reconstruct the ceRNA biological network of cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) and to select an appropriate mRNA as a biomarker that could be used for CESC early diagnosis and prognosis evaluation. We downloaded CESC data from the TCGA public database, and statistical analysis was conducted with the R software to find out differential expressed genes encoding for lncRNAs, miRNAs, and mRNAs. The differentially expressed mRNAs (DEmRNAs) screened in the ceRNA network were analyzed for survival to find the mRNAs with significantly linked to the survival prognosis. These mRNAs were searched in the Pathological Atlas to identify the final appropriate mRNAs. Differential expression analysis revealed 773 lncRNAs, 94 miRNAs, and 2466 mRNAs. Survival analysis of DEmRNAs in the ceRNA network indicated that ADGRF4, ANXA8L1, HCAR3, IRF6, and PDE2A ( < 0.05) were negatively correlated with survival time. Verification of these six DEmRNAs in the Pathology Atlas indicated that PDE2A was a possible biomarker for CESC patients. PDE2A might be a biomarker for early diagnosis and prognosis evaluation of CESC patients, but due to the lack of available data, further studies may be needed for confirmation.

摘要

为了重建宫颈鳞癌和宫颈内膜腺癌(CESC)的 ceRNA 生物网络,并选择合适的 mRNA 作为 CESC 早期诊断和预后评估的生物标志物。我们从 TCGA 公共数据库下载了 CESC 数据,并用 R 软件进行了统计分析,以找出编码 lncRNA、miRNA 和 mRNA 的差异表达基因。在 ceRNA 网络中筛选出差异表达的 mRNAs(DEmRNAs)进行生存分析,以找到与生存预后显著相关的 mRNAs。这些 mRNAs 在病理图谱中进行了搜索,以确定最终合适的 mRNAs。差异表达分析显示有 773 个 lncRNA、94 个 miRNA 和 2466 个 mRNA。ceRNA 网络中 DEmRNAs 的生存分析表明,ADGRF4、ANXA8L1、HCAR3、IRF6 和 PDE2A(<0.05)与生存时间呈负相关。在病理图谱中对这六个 DEmRNAs 的验证表明,PDE2A 可能是 CESC 患者的一个潜在生物标志物。PDE2A 可能是 CESC 患者早期诊断和预后评估的生物标志物,但由于缺乏可用数据,可能需要进一步研究来确认。

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