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半胱天冬酶同源物的故事及其进化前景:解读蓝藻中的程序性细胞死亡

The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria.

作者信息

Bhattacharjee Samujjal, Mishra Arun Kumar

机构信息

Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi, India.

出版信息

J Exp Bot. 2020 Aug 6;71(16):4639-4657. doi: 10.1093/jxb/eraa213.

Abstract

Programmed cell death (PCD), a genetically orchestrated mechanism of cellular demise, is paradoxically required to support life. As in lower eukaryotes and bacteria, PCD in cyanobacteria is poorly appreciated, despite recent biochemical and molecular evidence that supports its existence. Cyanobacterial PCD is an altruistic reaction to stressful conditions that significantly enhances genetic diversity and inclusive fitness of the population. Recent bioinformatic analysis has revealed an abundance of death-related proteases, i.e. orthocaspases (OCAs) and their mutated variants, in cyanobacteria, with the larger genomes of morphologically complex strains harbouring most of them. Sequence analysis has depicted crucial accessory domains along with the proteolytic p20-like sub-domain in OCAs, predicting their functional versatility. However, the cascades involved in sensing death signals, their transduction, and the downstream expression and activation of OCAs remain to be elucidated. Here, we provide a comprehensive description of the attempts to identify mechanisms of PCD and the existence and importance of OCAs based on in silico approaches. We also review the evolutionary and ecological significance of PCD in cyanobacteria. In the future, the analysis of cyanobacterial PCD will identify novel proteins that have varied functional roles in signalling cascades and also help in understanding the incipient mechanism of PCD morphotype(s) from where eukaryotic PCD might have originated.

摘要

程序性细胞死亡(PCD)是一种由基因精心编排的细胞死亡机制,矛盾的是,它却是维持生命所必需的。与低等真核生物和细菌一样,尽管最近有生化和分子证据支持蓝藻中存在PCD,但人们对其了解甚少。蓝藻中的PCD是对压力条件的一种利他反应,可显著提高种群的遗传多样性和整体适应性。最近的生物信息学分析表明,蓝藻中存在大量与死亡相关的蛋白酶,即直系半胱天冬酶(OCA)及其突变变体,形态复杂菌株的较大基因组中含有大多数此类蛋白酶。序列分析描绘了OCA中关键的辅助结构域以及蛋白水解性的p20样亚结构域,预测了它们功能的多样性。然而,参与感知死亡信号、信号转导以及OCA下游表达和激活的级联反应仍有待阐明。在此,我们全面描述了基于计算机方法识别PCD机制以及OCA的存在和重要性的尝试。我们还综述了蓝藻中PCD的进化和生态意义。未来,对蓝藻PCD的分析将鉴定出在信号级联反应中具有多种功能作用的新蛋白,也有助于理解真核生物PCD可能起源的PCD形态类型的初始机制。

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