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光合蓝细菌中细胞死亡相关蛋白的计算机模拟洞察

In silico insight of cell-death-related proteins in photosynthetic cyanobacteria.

作者信息

Ghag Siddhesh B, D'Souza Jacinta S

机构信息

School of Biological Sciences, UM-DAE Centre for Excellence in Basic Sciences, University of Mumbai Campus, Kalina, Santacruz (E), Mumbai, 400098, India.

出版信息

Arch Microbiol. 2022 Jul 21;204(8):511. doi: 10.1007/s00203-022-03130-2.

DOI:10.1007/s00203-022-03130-2
PMID:35864385
Abstract

Cyanobacteria are a large group of ubiquitously found photosynthetic prokaryotes that are constantly exposed to different kinds of stressors of varying intensities and seem to overcome these in a precise and regulated manner. However, a high dose and duration of given stress induce cell death in a few select cyanobacteria, mainly to protect other cells (altruism). Despite the recent findings for the presence of biochemical and molecular hallmarks of cell death in cyanobacteria, it is yet a sketchily understood phenomenon. Regulation of metacaspase-like genes during Programmed Cell Death suggests it to be a genetically controlled mechanism like other eukaryotes. In addition to providing a comprehensive understanding of the current status of cell death in cyanobacteria, this review has used in silico analyses to directly compare the existence of some important molecular players operating in the intrinsic and extrinsic apoptotic pathways. Phylogenetic trees for all sequences indicate a cluster with a common ancestry and also a divergence from sequences of eukaryotic origin. To the best of our knowledge, such a comparison (except for orthocaspases) has not been attempted earlier and hopes to encourage workers in the field to investigate this altruistic phenomenon in detail.

摘要

蓝细菌是一类广泛存在的光合原核生物,它们经常暴露于不同强度的各种应激源下,并且似乎能以精确且受调控的方式克服这些应激。然而,特定应激的高剂量和持续时间会在少数特定的蓝细菌中诱导细胞死亡,主要是为了保护其他细胞(利他行为)。尽管最近发现蓝细菌中存在细胞死亡的生化和分子特征,但这仍是一个了解甚少的现象。程序性细胞死亡过程中类metacaspase基因的调控表明,它是一种像其他真核生物一样受基因控制的机制。除了全面了解蓝细菌细胞死亡的现状外,本综述还利用计算机分析直接比较了在内在和外在凋亡途径中发挥作用的一些重要分子参与者的存在情况。所有序列的系统发育树表明存在一个具有共同祖先的聚类,并且与真核生物起源的序列存在差异。据我们所知,此前尚未尝试过这种比较(除了orthocaspases),希望能鼓励该领域的研究人员详细研究这种利他现象。

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本文引用的文献

1
A Stochastic Characterization of Hydrogen Peroxide-Induced Regulated Cell Death in .过氧化氢诱导的[具体对象]中程序性细胞死亡的随机特征描述
Front Microbiol. 2021 Jul 28;12:636157. doi: 10.3389/fmicb.2021.636157. eCollection 2021.
2
Examining the Evidence for Regulated and Programmed Cell Death in Cyanobacteria. How Significant Are Different Forms of Cell Death in Cyanobacteria Population Dynamics?审视蓝藻中调控性和程序性细胞死亡的证据。不同形式的细胞死亡在蓝藻种群动态中具有多大的重要性?
Front Microbiol. 2021 Mar 22;12:633954. doi: 10.3389/fmicb.2021.633954. eCollection 2021.
3
Cell Death in Cyanobacteria: Current Understanding and Recommendations for a Consensus on Its Nomenclature.
蓝藻中的细胞死亡:当前的认识及关于其命名达成共识的建议
Front Microbiol. 2021 Mar 3;12:631654. doi: 10.3389/fmicb.2021.631654. eCollection 2021.
4
Cyanobacteria-Derived Proline Increases Stress Tolerance in Root Hairs by Suppressing Programmed Cell Death.蓝藻来源的脯氨酸通过抑制程序性细胞死亡提高根毛的胁迫耐受性。
Front Plant Sci. 2020 Dec 14;11:490075. doi: 10.3389/fpls.2020.490075. eCollection 2020.
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Oxidative Stress, Programmed Cell Death and Microcystin Release in in Response to Grazers.应对食草动物时的氧化应激、程序性细胞死亡与微囊藻毒素释放
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The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria.半胱天冬酶同源物的故事及其进化前景:解读蓝藻中的程序性细胞死亡
J Exp Bot. 2020 Aug 6;71(16):4639-4657. doi: 10.1093/jxb/eraa213.
7
Microcystin Levels in Selected Cyanobacteria Exposed to Varying Salinity.暴露于不同盐度下的特定蓝藻中的微囊藻毒素水平
J Water Resour Prot. 2019 Apr;11(4):395-403. doi: 10.4236/jwarp.2019.114023.
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The Growth, Apoptosis and Oxidative Stress in Microcystis viridis Exposed to Glyphosate.暴露于草甘膦的铜绿微囊藻的生长、凋亡和氧化应激。
Bull Environ Contam Toxicol. 2019 Oct;103(4):585-589. doi: 10.1007/s00128-019-02691-1. Epub 2019 Aug 19.
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J Microbiol Biotechnol. 2019 Jul 28;29(7):1014-1021. doi: 10.4014/jmb.1904.04017.
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Environ Microbiol. 2019 Feb;21(2):667-681. doi: 10.1111/1462-2920.14512. Epub 2019 Jan 21.