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基于结构的计算机辅助蛋白设计对高浓度抗体黏度的建模与缓解。

Modeling and mitigation of high-concentration antibody viscosity through structure-based computer-aided protein design.

机构信息

BioMedicine Design, Pfizer Inc, Cambridge, Massachusetts, United States of America.

出版信息

PLoS One. 2020 May 7;15(5):e0232713. doi: 10.1371/journal.pone.0232713. eCollection 2020.

DOI:10.1371/journal.pone.0232713
PMID:32379792
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7205207/
Abstract

For an antibody to be a successful therapeutic many competing factors require optimization, including binding affinity, biophysical characteristics, and immunogenicity risk. Additional constraints may arise from the need to formulate antibodies at high concentrations (>150 mg/ml) to enable subcutaneous dosing with reasonable volume (ideally <1.0 mL). Unfortunately, antibodies at high concentrations may exhibit high viscosities that place impractical constraints (such as multiple injections or large needle diameters) on delivery and impede efficient manufacturing. Here we describe the optimization of an anti-PDGF-BB antibody to reduce viscosity, enabling an increase in the formulated concentration from 80 mg/ml to greater than 160 mg/ml, while maintaining the binding affinity. We performed two rounds of structure guided rational design to optimize the surface electrostatic properties. Analysis of this set demonstrated that a net-positive charge change, and disruption of negative charge patches were associated with decreased viscosity, but the effect was greatly dependent on the local surface environment. Our work here provides a comprehensive study exploring a wide sampling of charge-changes in the Fv and CDR regions along with targeting multiple negative charge patches. In total, we generated viscosity measurements for 40 unique antibody variants with full sequence information which provides a significantly larger and more complete dataset than has previously been reported.

摘要

为了使抗体成为一种成功的治疗方法,许多竞争因素都需要优化,包括结合亲和力、物理化学特性和免疫原性风险。由于需要将抗体配制成高浓度(>150mg/ml)以实现合理剂量的皮下给药(理想情况下<1.0ml),因此可能会出现额外的限制。不幸的是,高浓度的抗体可能表现出高粘度,这对给药施加了不切实际的限制(例如多次注射或大直径针头),并阻碍了有效的制造。在这里,我们描述了一种抗 PDGF-BB 抗体的优化,以降低粘度,使制剂浓度从 80mg/ml 增加到 160mg/ml 以上,同时保持结合亲和力。我们进行了两轮结构引导的合理设计,以优化表面静电特性。对这组数据的分析表明,净正电荷的变化和负电荷斑块的破坏与粘度降低有关,但这种影响在很大程度上取决于局部表面环境。我们在这里的工作提供了一项全面的研究,探索了 Fv 和 CDR 区域中广泛的电荷变化以及针对多个负电荷斑块的情况。总共,我们对 40 种具有完整序列信息的独特抗体变体进行了粘度测量,这提供了比以前报道的更大、更完整的数据集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/97707565f90e/pone.0232713.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/76d963a1274b/pone.0232713.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/3db4ed41d9e3/pone.0232713.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/929089cc6656/pone.0232713.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/f4c18c7c43a8/pone.0232713.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/e539c6e4d268/pone.0232713.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/035bdb8aa6d5/pone.0232713.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/97707565f90e/pone.0232713.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/76d963a1274b/pone.0232713.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/3db4ed41d9e3/pone.0232713.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/929089cc6656/pone.0232713.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/f4c18c7c43a8/pone.0232713.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/e539c6e4d268/pone.0232713.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/035bdb8aa6d5/pone.0232713.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cb00/7205207/97707565f90e/pone.0232713.g007.jpg

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