Marine College, Shandong University, Weihai, Shandong 264209, PR China.
State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, PR China.
Int J Syst Evol Microbiol. 2020 May;70(5):3528-3533. doi: 10.1099/ijsem.0.004210.
A Gram-stain-negative, rod-shaped, facultative anaerobic bacterium, designated strain 3539, was isolated from coastal sediment of Weihai, PR China. Optimal growth occurred at 28 °C, pH 7.5-8.0 and in the presence of 3.0 % (w/v) NaCl. Results of phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 3539 formed a robust clade with members of the genus and was closely related to JCM 16154, F2 and sw153 with 97.7, 96.2 and 95.4 % sequence similarity, respectively. The average amino acid identity, percentage of conserved proteins, average nucleotide identity and digital DNA-DNA hybridization values between strain 3539 and JCM 16154 were 64.9, 68.3, 72.8 and 18.9 %, respectively. The genomic DNA G+C content of strain 3539 was 42.0 mol%. The dominant respiratory quinone was ubiquinone-8, and the major fatty acids were iso-C and summed feature 3 (C ω7/C ω6). The polar lipids of strain 3539 consisted of phosphatidyldimethylethanolamine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, one unidentified aminophospholipid, one unidentified lipid and three unidentified phospholipids. Based on the combination of phylogenetic, phenotypic and chemotaxonomic data, strain 3539 is considered to represent a novel species within the genus in he family , for which the name sp. nov. is proposed. The type strain of the new species is 3539 (=KCTC 72414=MCCC 1H00388).
一株革兰氏阴性、杆状、兼性厌氧细菌,被命名为 3539 株,从中国威海沿海沉积物中分离得到。最佳生长条件为 28°C、pH7.5-8.0 和 3.0%(w/v)NaCl。基于 16S rRNA 基因序列的系统发育分析结果表明,菌株 3539 与属内的成员形成了一个强大的分支,与 JCM 16154、F2 和 sw153 最为密切相关,序列相似性分别为 97.7%、96.2%和 95.4%。菌株 3539 与 JCM 16154 的平均氨基酸同一性、保守蛋白百分比、平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 64.9%、68.3%、72.8%和 18.9%。菌株 3539 的基因组 DNA G+C 含量为 42.0mol%。主要呼吸醌为泛醌-8,主要脂肪酸为 iso-C 和总和特征 3(C ω7/C ω6)。菌株 3539 的极性脂由磷脂酰二甲乙醇胺、磷脂酰乙醇胺、磷脂酰甘油、磷脂酰胆碱、一种未鉴定的氨基磷脂、一种未鉴定的脂类和三种未鉴定的磷脂组成。基于系统发育、表型和化学分类学数据的综合分析,菌株 3539 被认为代表了属内的一个新种,建议将其命名为 sp. nov.。新种的模式菌株为 3539 株(=KCTC 72414=MCCC 1H00388)。