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新种,一种从沿海沉积物中分离出的海洋细菌。

sp. nov. a marine bacterium isolated from coastal sediment.

机构信息

Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, State Key Laboratory Breeding Base of Marine Genetic Resources, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, PR China.

School of Environmental Science and Engineering, Tianjin University, Tianjin 300387, PR China.

出版信息

Int J Syst Evol Microbiol. 2020 Sep;70(9):4960-4965. doi: 10.1099/ijsem.0.004365.

Abstract

A Gram-stain-negative, motile, aerobic and heterotrophic bacterium, designated as GYS_M3H, was isolated from marine coastal sediment sampled at Xiamen Island. Cells were rod-shaped with one polar flagellum and weakly positive for oxidase and catalase. Growth of the strain occurred at pH 6-9 (optimum, pH 7-8), at 15-37 °C (optimum, 28 °C) and with NaCl concentrations of 1.0-6.0 % (optimum, 2.0 %). It had highest 16S rRNA similarity (97.7 %) to GI5, followed by the members of the genus (lower than 91.2 %). The results of phylogenetic analysis indicated that it belonged to the genus within the family . In addition, the average nucleotide identity and digital DNA-DNA hybridization values between strain GYS_M3H and GI5 were 71.4 and 19.7 %, respectively, indicating that strain GYS_M3H belonged to a novel species. Its genome consisted of 5 318 758 bp, with a genomic DNA G+C content of 50.0 mol%. The respiratory quinone was Q-8 and the dominant fatty acids were identified as iso-C (25.4 %), C ω6c/C ω7 (14.4 %) and iso-C (7.2 %). The main polar lipids were phosphatidylethanolamine and phosphatidylglycerol. Therefore, based on phenotypic, chemotaxonomic and phylogenetic results, strain GYS_M3H represents a novel species within the genus , for which the name sp. nov. is proposed, with the type strain GYS_M3H (=MCCC 1A13808=KCTC 72247).

摘要

一株革兰氏阴性、运动、需氧和异养的细菌,被命名为 GYS_M3H,从厦门岛海洋沿海沉积物中分离得到。细胞呈杆状,有一个极生鞭毛,氧化酶和过氧化氢酶弱阳性。该菌株在 pH6-9(最佳,pH7-8)、15-37°C(最佳,28°C)和 NaCl 浓度为 1.0-6.0%(最佳,2.0%)的条件下生长。它与 GI5 的 16S rRNA 相似度最高(97.7%),其次是属内的其他成员(低于 91.2%)。系统发育分析的结果表明,它属于 属,属于 科。此外,菌株 GYS_M3H 和 GI5 之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 71.4%和 19.7%,表明菌株 GYS_M3H 属于一个新的种。其基因组由 5318758bp 组成,基因组 DNA G+C 含量为 50.0mol%。呼吸醌为 Q-8,主要脂肪酸为 iso-C(25.4%)、C ω6c/C ω7(14.4%)和 iso-C(7.2%)。主要极性脂为磷脂酰乙醇胺和磷脂酰甘油。因此,基于表型、化学分类和系统发育结果,菌株 GYS_M3H 代表 属中的一个新种,建议命名为 sp. nov.,其模式菌株为 GYS_M3H(=MCCC 1A13808=KCTC 72247)。

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