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无标度拓扑作为一种有效的反馈系统。

Scale free topology as an effective feedback system.

机构信息

Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel.

Network Biology Research Laboratories, Technion - Israel Institute of Technology, Haifa, Israel.

出版信息

PLoS Comput Biol. 2020 May 11;16(5):e1007825. doi: 10.1371/journal.pcbi.1007825. eCollection 2020 May.

Abstract

Biological networks are often heterogeneous in their connectivity pattern, with degree distributions featuring a heavy tail of highly connected hubs. The implications of this heterogeneity on dynamical properties are a topic of much interest. Here we show that interpreting topology as a feedback circuit can provide novel insights on dynamics. Based on the observation that in finite networks a small number of hubs have a disproportionate effect on the entire system, we construct an approximation by lumping these nodes into a single effective hub, which acts as a feedback loop with the rest of the nodes. We use this approximation to study dynamics of networks with scale-free degree distributions, focusing on their probability of convergence to fixed points. We find that the approximation preserves convergence statistics over a wide range of settings. Our mapping provides a parametrization of scale free topology which is predictive at the ensemble level and also retains properties of individual realizations. Specifically, outgoing hubs have an organizing role that can drive the network to convergence, in analogy to suppression of chaos by an external drive. In contrast, incoming hubs have no such property, resulting in a marked difference between the behavior of networks with outgoing vs. incoming scale free degree distribution. Combining feedback analysis with mean field theory predicts a transition between convergent and divergent dynamics which is corroborated by numerical simulations. Furthermore, they highlight the effect of a handful of outlying hubs, rather than of the connectivity distribution law as a whole, on network dynamics.

摘要

生物网络在连接模式上通常是异构的,其度分布具有高度连接的枢纽的重尾。这种异质性对动力学性质的影响是一个备受关注的话题。在这里,我们表明将拓扑结构解释为反馈回路可以为动力学提供新的见解。基于在有限网络中少量枢纽对整个系统有不成比例的影响的观察,我们通过将这些节点合并到单个有效枢纽中,构建了一个近似值,该枢纽作为与其余节点的反馈回路。我们使用这个近似值来研究具有无标度度分布的网络的动力学,重点是它们收敛到固定点的概率。我们发现,该近似值在广泛的设置范围内保留了收敛统计数据。我们的映射提供了一种可预测整体水平并保留单个实现属性的无标度拓扑参数化。具体来说,外向枢纽具有组织作用,可以使网络收敛,类似于外部驱动对混沌的抑制。相比之下,内向枢纽没有这样的性质,导致具有外向和内向无标度度分布的网络的行为有明显的差异。将反馈分析与平均场理论相结合,可以预测从收敛到发散的动力学转变,这得到了数值模拟的证实。此外,它们突出了少数异常枢纽的影响,而不是整个连接分布规律对网络动力学的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9964/7241857/e9d1613a0e51/pcbi.1007825.g001.jpg

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