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理论自由能剖面和用于氨基硫脲有机催化硝酮-迈克尔加成反应的泛函基准测试。

Theoretical free energy profile and benchmarking of functionals for amino-thiourea organocatalyzed nitro-Michael addition reaction.

机构信息

Departamento de Ciências Naturais, Universidade Federal de São João del-Rei, 36301-160, São João del-Rei, MG, Brazil.

出版信息

Phys Chem Chem Phys. 2020 May 28;22(20):11529-11536. doi: 10.1039/d0cp00481b. Epub 2020 May 12.

Abstract

Amino-thiourea organocatalysis is an important catalytic process for enantioselective conjugate addition reactions. The interaction of the reactants with the catalyst has a substantial effect of dispersion forces and is a challenge for a reliable description when applying density functional theory. In this report, the classical addition of acetylacetone to β-nitro-styrene catalyzed by Takemoto's catalyst in toluene was studied using the PBE functional for geometry optimization and the DLPNO-CCSD(T) benchmark method for single point energy. The complete free energy profile calculated for the reaction was able to explain all experimental observations, including the fact that the carbon-carbon bond formation step is rate-determining. The overall barrier was calculated to be 22.8 kcal mol (experimental value approximately 20 kcal mol), and the enantiomeric excess was calculated to be 88% (experimental value in the range of 84 to 92%). Some functionals were tested for single point energy. The hybrid B3LYP presented a high mean absolute deviation (MAD) from the DLPNO-CCSD(T) benchmark method by approximately 20 kcal mol. The inclusion of empirical dispersion correction in the B3LYP method decreased the MAD to 6 kcal mol. Even the double-hybrid mPW2-PLYP and B2GP-PLYP methods had MAD values of approximately 5 kcal mol. The inclusion of the dispersion correction decreased the MAD to 3.6 kcal mol. M06-2X and ωB97X-D3 were the most accurate among the tested functionals, with MADs of 2.5 kcal mol and 1.8 kcal mol, respectively. Additivity approximation of the correlation energy was also tested and presented a MAD of only 0.6 kcal mol.

摘要

氨硫脲有机催化是对映选择性共轭加成反应的重要催化过程。反应物与催化剂的相互作用对分散力有很大影响,在应用密度泛函理论时,这是一个可靠描述的挑战。在本报告中,使用 PBE 函数进行几何优化,并使用 DLPNO-CCSD(T)基准方法进行单点能计算,研究了 Takemoto 催化剂在甲苯中催化乙酰丙酮与β-硝基-苯乙烯的经典加成反应。计算得到的反应完整自由能曲线能够解释所有实验观察结果,包括碳-碳键形成步骤是速率决定步骤这一事实。计算得到的总势垒为 22.8 kcal mol(实验值约为 20 kcal mol),对映体过量值计算为 88%(实验值在 84%至 92%范围内)。还测试了一些函数进行单点能计算。杂化 B3LYP 与 DLPNO-CCSD(T)基准方法相比,平均绝对偏差(MAD)约为 20 kcal mol。在 B3LYP 方法中包含经验色散校正后,MAD 降低至 6 kcal mol。即使是双杂化 mPW2-PLYP 和 B2GP-PLYP 方法,MAD 值也约为 5 kcal mol。包含色散校正后,MAD 降低至 3.6 kcal mol。在测试的函数中,M06-2X 和 ωB97X-D3 最准确,MAD 值分别为 2.5 kcal mol 和 1.8 kcal mol。还测试了相关能量的加性近似,其 MAD 值仅为 0.6 kcal mol。

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