Basit Abdul, Ali Tanveer, Rehman Shafiq Ur
Department of Microbiology and Molecular Genetics, University of the Punjab, Lahore, Pakistan.
J Biomol Struct Dyn. 2021 Jul;39(10):3605-3614. doi: 10.1080/07391102.2020.1768150. Epub 2020 May 20.
The current pandemic of Covid-19 caused by SARS-CoV-2 is continued to spread globally and no potential drug or vaccine against it is available. Spike (S) glycoprotein is the structural protein of SARS-CoV-2 located on the envelope surface, involve in interaction with angiotensin converting enzyme 2 (ACE2), a cell surface receptor, followed by entry into the host cell. Thereby, blocking the S glycoprotein through potential inhibitor may interfere its interaction with ACE2 and impede its entry into the host cell. Here, we present a truncated version of human ACE2 (tACE2), comprising the N terminus region of the intact ACE2 from amino acid position 21-119, involved in binding with receptor binding domain (RBD) of SARS-CoV-2. We analyzed the in-silico potential of tACE2 to compete with intact ACE2 for binding with RBD. The protein-protein docking and molecular dynamic simulation showed that tACE2 has higher binding affinity for RBD and form more stabilized complex with RBD than the intact ACE2. Furthermore, prediction of tACE2 soluble expression in makes it a suitable candidate to be targeted for Covid-19 therapeutics. This is the first MD simulation based findings to provide a high affinity protein inhibitor for SARS-CoV-2 S glycoprotein, an important target for drug designing against this unprecedented challenge.Communicated by Ramaswamy H. Sarma.
由严重急性呼吸综合征冠状病毒2(SARS-CoV-2)引起的新型冠状病毒肺炎(Covid-19)大流行正在全球持续蔓延,目前尚无针对该病毒的有效药物或疫苗。刺突(S)糖蛋白是SARS-CoV-2的结构蛋白,位于病毒包膜表面,参与与细胞表面受体血管紧张素转换酶2(ACE2)的相互作用,随后进入宿主细胞。因此,通过潜在抑制剂阻断S糖蛋白可能会干扰其与ACE2的相互作用,并阻止其进入宿主细胞。在此,我们展示了一种截短形式的人ACE2(tACE2),它包含完整ACE2从氨基酸位置21至119的N末端区域,该区域参与与SARS-CoV-2受体结合域(RBD)的结合。我们分析了tACE2在计算机模拟中与完整ACE2竞争结合RBD的潜力。蛋白质-蛋白质对接和分子动力学模拟表明,tACE2对RBD具有更高的结合亲和力,并且与RBD形成的复合物比完整ACE2更稳定。此外,对tACE2可溶性表达的预测使其成为Covid-19治疗的合适靶点。这是首个基于分子动力学模拟的研究结果,为SARS-CoV-2 S糖蛋白提供了一种高亲和力蛋白抑制剂,该蛋白是应对这一前所未有的挑战进行药物设计的重要靶点。由拉马斯瓦米·H·萨尔马通讯。