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优化全球入侵性瓢虫种群基因组研究的样本量

Optimizing Sample Size for Population Genomic Study in a Global Invasive Lady Beetle, .

作者信息

Li Hongran, Qu Wanmei, Obrycki John J, Meng Ling, Zhou Xuguo, Chu Dong, Li Baoping

机构信息

College of Plant Protection, Nanjing Agricultural University, Nanjing 210095, China.

Key Lab of Integrated Crop Pest Management of Shandong Province, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao 266109, China.

出版信息

Insects. 2020 May 9;11(5):290. doi: 10.3390/insects11050290.

Abstract

Finding optimal sample sizes is critical for the accurate estimation of genetic diversity of large invasive populations. Based on previous studies, we hypothesized that a minimal sample size of 3-8 individuals is sufficient to dissect the population architecture of the harlequin lady beetle, , a biological control agent and an invasive alien species. Here, equipped with a type IIB endonuclease restriction site-associated (2b-RAD) DNA sequencing approach, we identified 13,766 and 13,929 single nucleotide polymorphisms (SNPs), respectively, among native and invasive populations. With this information we simulated populations using a randomly selected 3000 SNPs and a subset of individuals. From this simulation we finally determined that six individuals is the minimum sample size required for the accurate estimation of intra- and inter-population genetic diversity within and across populations. Our findings provide an empirical advantage for population genomic studies of in particular and suggest useful tactics for similar studies on multicellular organisms in general.

摘要

确定最佳样本量对于准确估计大型入侵种群的遗传多样性至关重要。基于先前的研究,我们假设3 - 8个个体的最小样本量足以剖析多异瓢虫(一种生物防治剂和外来入侵物种)的种群结构。在此,我们采用IIB型内切酶限制性位点相关(2b-RAD)DNA测序方法,分别在本地种群和入侵种群中鉴定出13766个和13929个单核苷酸多态性(SNP)。利用这些信息,我们使用随机选择的3000个SNP和一部分个体模拟种群。通过该模拟,我们最终确定六个个体是准确估计多异瓢虫种群内和种群间遗传多样性所需的最小样本量。我们的研究结果为多异瓢虫的种群基因组研究提供了实证优势,并且总体上为多细胞生物的类似研究提供了有用策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0aa1/7291016/b7879b4714cf/insects-11-00290-g001.jpg

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