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西海红杆菌SW-135的全基因组序列揭示了红杆菌属在海洋环境磷循环中的生态作用。

Complete genome sequence of Erythrobacter seohaensis SW-135 sheds light on the ecological role of the genus Erythrobacter for phosphorus cycle in the marine environment.

作者信息

Xu Lin, Wu Yue-Hong, Cheng Hong, Sun Cong, Han Bing-Nan, Xu Xue-Wei

机构信息

College of Life Sciences, Zhejiang Sci-Tech University, Hangzhou 310018, PR China.

Key Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, Hangzhou 310012, PR China.

出版信息

Mar Genomics. 2018 Jul;40:21-24. doi: 10.1016/j.margen.2018.03.001. Epub 2018 Mar 24.

Abstract

Erythrobacter seohaensis SW-135 was isolated from inter sediments collected from an intertidal zone of the Yellow Sea in Korea. The genome of E. seohaensis SW-135 was sequenced and comprised of one circular chromosome with the size of 2,942,673 bp and DNA G + C content of 61.7%. It was reported that E. seohaensis SW-135 was positive for alkaline phosphatase activity by enzymatic test. Genomic annotation indicated that the genome of E. seohaensis SW-135 had two alkaline phosphatase-encoding genes, phoD and phoX, which products can dephosphorylate phosphoesters to more bioavailable dissolved inorganic phosphorus for microorganisms in the phosphorus limited condition. Comparative genomic analysis of marine Erythrobacter strains revealed that phoD and phoX were widely distributed in these strains, indicating the genus Erythrobacter may play an important role in the marine phosphorus cycle. This study broadens our understandings about ecological roles of the genus Erythrobacter participating in the marine phosphorus cycle, which is rarely investigated previously.

摘要

西海红杆菌SW-135是从韩国黄海潮间带采集的潮间带沉积物中分离出来的。对西海红杆菌SW-135的基因组进行了测序,其由一条大小为2,942,673 bp的环状染色体组成,DNA G+C含量为61.7%。据报道,通过酶促试验,西海红杆菌SW-135的碱性磷酸酶活性呈阳性。基因组注释表明,西海红杆菌SW-135的基因组有两个编码碱性磷酸酶的基因,phoD和phoX,其产物可以在磷限制条件下将磷酸酯去磷酸化,为微生物提供更多可生物利用的溶解无机磷。对海洋红杆菌菌株的比较基因组分析表明,phoD和phoX在这些菌株中广泛分布,这表明红杆菌属可能在海洋磷循环中发挥重要作用。本研究拓宽了我们对红杆菌属参与海洋磷循环的生态作用的理解,此前对此鲜有研究。

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