Department of Chemical and Biomolecular Engineering, Tulane University, New Orleans, LA, USA.
Department of Chemistry, Tulane University, New Orleans, LA, USA.
Nat Chem. 2020 Jul;12(7):589-594. doi: 10.1038/s41557-020-0458-8. Epub 2020 May 18.
There are many open questions regarding the hydration of solvent-exposed non-polar tracts and pockets in proteins. Although water is predicted to de-wet purely repulsive surfaces and evacuate crevices, the extent of de-wetting is unclear when ubiquitous van der Waals interactions are in play. The structural simplicity of synthetic supramolecular hosts imbues them with considerable potential to address this issue. To this end, here we detail a combination of densimetry and molecular dynamics simulations of three cavitands, coupled with calorimetric studies of their complexes with short-chain carboxylates. Our results reveal the range of wettability possible within the ostensibly identical cavitand pockets-which differ only in the presence and/or position of the methyl groups that encircle the portal to their non-polar pockets. The results demonstrate the ability of macrocycles to template water cavitation within their binding sites and show how the orientation of methyl groups can trigger the drying of non-polar pockets in liquid water, which suggests new avenues to control guest complexation.
关于溶剂暴露的非极性通道和口袋在蛋白质中的水合作用,存在许多悬而未决的问题。尽管水被预测可以使纯排斥表面脱湿并排空缝隙,但当普遍存在的范德华相互作用起作用时,脱湿的程度尚不清楚。合成超分子主体的结构简单性赋予了它们解决这个问题的巨大潜力。为此,我们详细描述了三种穴状配体的密度测定和分子动力学模拟的组合,以及它们与短链羧酸配合物的量热研究。我们的结果揭示了在表面上相同的穴状配体口袋内可能的润湿性范围 - 仅在环绕其非极性口袋入口的甲基的存在和/或位置上有所不同。结果表明大环能够在其结合位点内模板水分子空化,并展示了甲基的取向如何引发在液态水中非极性口袋的干燥,这为控制客体络合提供了新的途径。