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网络分析胶质瘤中热休克蛋白的差异表达。

Network Analyses of the Differential Expression of Heat Shock Proteins in Glioma.

机构信息

Key Laboratory of Molecular Biology in High Cancer Incidence Coastal Chaoshan Area of Guangdong Higher Education Institutes, Shantou University Medical College, Shantou, China.

Department of Biochemistry and Molecular Biology, Shantou University Medical College, Shantou, China.

出版信息

DNA Cell Biol. 2020 Jul;39(7):1228-1242. doi: 10.1089/dna.2020.5425. Epub 2020 May 19.

Abstract

Heat shock protein (HSP) is a family of highly conserved protein, which exists widely in various organisms and has a variety of important physiological functions. Currently, there is no systematic analysis of HSPs in human glioma. The aim of this study was to investigate the characteristics of HSPs through constructing protein-protein interaction network (PPIN) considering the expression level of HSPs in glioma. After the identification of the differentially expressed HSPs in glioma tissues, a specific PPIN was constructed and found that there were many interactions between the differentially expressed HSPs in glioma. Subcellular localization analysis shows that HSPs and their interacting proteins distribute from the cell membrane to the nucleus in a multilayer structure. By functional enrichment analysis, gene ontology analysis, and Kyoto Encyclopedia of Genes and Genomes pathway analysis, the potential function of HSPs and two meaningful enrichment pathways was revealed. In addition, nine HSPs (DNAJA4, DNAJC6, DNAJC12, HSPA6, HSP90B1, DNAJB1, DNAJB6, DNAJC10, and SERPINH1) are prognostic markers for human brain glioma. These analyses provide a full view of HSPs about their expression, biological process, as well as clinical significance in glioma.

摘要

热休克蛋白(HSP)是一组高度保守的蛋白质,广泛存在于各种生物中,具有多种重要的生理功能。目前,人类脑胶质瘤中 HSPs 的系统分析还没有。本研究旨在通过构建考虑 HSP 在脑胶质瘤中表达水平的蛋白质-蛋白质相互作用网络(PPIN),来研究 HSPs 的特征。在鉴定脑胶质瘤组织中差异表达的 HSPs 后,构建了一个特定的 PPIN,并发现脑胶质瘤中差异表达的 HSPs 之间存在许多相互作用。亚细胞定位分析表明,HSPs 及其相互作用蛋白从细胞膜分布到细胞核,呈多层次结构。通过功能富集分析、京都基因与基因组百科全书通路分析和基因本体论分析,揭示了 HSPs 的潜在功能和两条有意义的富集通路。此外,9 种 HSPs(DNAJA4、DNAJC6、DNAJC12、HSPA6、HSP90B1、DNAJB1、DNAJB6、DNAJC10 和 SERPINH1)是人类脑胶质瘤的预后标志物。这些分析为 HSPs 在脑胶质瘤中的表达、生物学过程以及临床意义提供了全面的了解。

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