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6-溴-3-(12-溴十二烷基)-2-(4-硝基苯基)-4-咪唑并[4,5-]吡啶的晶体结构、 Hirshfeld表面分析及密度泛函理论研究

Crystal structure, Hirshfeld surface analysis and DFT studies of 6-bromo-3-(12-bromo-dodec-yl)-2-(4-nitro-phen-yl)-4-imidazo[4,5-]pyridine.

作者信息

Jabri Zainab, Jarmoni Karim, Hökelek Tuncer, Mague Joel T, Sabir Safia, Kandri Rodi Youssef, Misbahi Khalid

机构信息

Laboratory of Applied Organic Chemistry, Sidi Mohamed Ben Abdellah University, Faculty of Sciences and Techniques, Road Immouzer, BP 2202 Fez, Morocco.

Department of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Apr 21;76(Pt 5):677-682. doi: 10.1107/S2056989020005228. eCollection 2020 May 1.

Abstract

The title compound, CHBrNO, consists of a 2-(4-nitro-phen-yl)-4-imidazo[4,5-]pyridine entity with a 12-bromo-dodecyl substituent attached to the pyridine N atom. The middle eight-carbon portion of the side chain is planar to within 0.09 (1) Å and makes a dihedral angle of 21.9 (8)° with the mean plane of the imidazolo-pyridine moiety, giving the mol-ecule a V-shape. In the crystal, the imidazolo-pyridine units are associated through slipped π-π stacking inter-actions together with weak C-H⋯O and C-H⋯O (Pyr = pyridine, Ntr = nitro and Brmdcyl = bromo-dodec-yl) hydrogen bonds. The 12-bromo-dodecyl chains overlap with each other between the stacks. The terminal -CHBr group of the side chain shows disorder over two resolved sites in a 0.902 (3):0.098 (3) ratio. Hirshfeld surface analysis indicates that the most important contributions for the crystal packing are from H⋯H (48.1%), H⋯Br/Br⋯H (15.0%) and H⋯O/O⋯H (12.8%) inter-actions. The optimized mol-ecular structure, using density functional theory at the B3LYP/ 6-311 G(d,p) level, is compared with the experimentally determined structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap.

摘要

标题化合物CHBrNO由一个2-(4-硝基苯基)-4-咪唑并[4,5-b]吡啶实体组成,其中一个12-溴十二烷基取代基连接在吡啶N原子上。侧链中间的八个碳原子部分平面度在0.09 (1) Å以内,与咪唑并吡啶部分的平均平面形成21.9 (8)°的二面角,使分子呈V形。在晶体中,咪唑并吡啶单元通过滑移π-π堆积相互作用以及弱的C-H⋯O和C-H⋯O(Pyr = 吡啶,Ntr = 硝基,Brmdcyl = 溴十二烷基)氢键相互关联。12-溴十二烷基链在堆积之间相互重叠。侧链的末端-CHBr基团在两个分辨位点上以0.902 (3):0.098 (3)的比例无序分布。 Hirshfeld表面分析表明,晶体堆积中最重要的贡献来自H⋯H(48.1%)、H⋯Br/Br⋯H(15.0%)和H⋯O/O⋯H(12.8%)相互作用。使用B3LYP/6-311G(d,p)水平的密度泛函理论对优化后的分子结构与固态下实验测定的结构进行了比较。阐明了HOMO-LUMO行为以确定能隙。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5ac/7199264/34e55ec2c249/e-76-00677-fig1.jpg

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