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蓝莓(Vaccinium corymbosum × angustifolium)在各种非生物胁迫下实时定量 PCR 归一化的参考基因选择。

Selection of reference genes for RT-qPCR normalization in blueberry (Vaccinium corymbosum × angustifolium) under various abiotic stresses.

机构信息

College of Life Sciences, Jilin Agricultural University, Changchun, China.

Engineering Center of Genetic Breeding and Innovative Utilization of Small Fruits of Jilin Province, College of Horticulture, Jilin Agricultural University, Changchun, China.

出版信息

FEBS Open Bio. 2020 Aug;10(8):1418-1435. doi: 10.1002/2211-5463.12903. Epub 2020 Jun 23.

Abstract

As a small fruit rich in anthocyanins, blueberry (Vaccinium corymbosum × angustifolium) has become a focus of research in recent years for identifying genes related to anthocyanin transport and stress resistance mechanisms based on transcriptome sequencing. However, the lack of validated, stably expressed reference genes greatly limits the functional study of blueberry genes. Therefore, in this study, we selected 14 candidate reference genes from a blueberry transcriptome database and used three algorithms (geNorm, NormFinder and BestKeeper) to evaluate the expression stability of these genes in various organs at different fruit developmental stages under five abiotic stress conditions. EF1α, EIF and TBP were observed to be the most stable and were thus chosen as reference genes for quantitative real-time PCR. Measurement of the relative expression of VcMATE1 (European Nucleotide Archive accession number KF875433) in blueberry further verified the reliability of these reference genes, which may have great utility for determining the accuracy of gene expression analyses in future research on blueberry.

摘要

蓝莓是一种富含花色苷的小水果,近年来已成为研究的焦点,通过转录组测序鉴定与花色苷运输和抗逆机制相关的基因。然而,缺乏经过验证、稳定表达的参考基因极大地限制了蓝莓基因的功能研究。因此,在本研究中,我们从蓝莓转录组数据库中选择了 14 个候选参考基因,并使用 3 种算法(geNorm、NormFinder 和 BestKeeper)评估这些基因在不同器官和 5 种非生物胁迫条件下不同果实发育阶段的表达稳定性。结果表明,EF1α、EIF 和 TBP 是最稳定的,因此被选为定量实时 PCR 的参考基因。对蓝莓 VcMATE1(欧洲核苷酸档案注册号 KF875433)的相对表达量进行测量,进一步验证了这些参考基因的可靠性,这对于确定未来蓝莓研究中基因表达分析的准确性可能具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7673/7396441/f6cb39154d24/FEB4-10-1418-g001.jpg

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