Krishnaswamy Veena Gayathri, Aishwarya S, Kathawala Tasneem M
Department of Biotechnology, Stella Maris College, Chennai, 600086, India.
Department of Bioinformatics, Stella Maris College, Chennai, 600086, India.
Curr Microbiol. 2020 Sep;77(9):2496-2509. doi: 10.1007/s00284-020-02020-4. Epub 2020 May 22.
Industrial effluents are potential threats to water bodies owing to the chemicals they contain to create pollution. Activated sludge effluents represent an ecosystem of multifaceted and interactive microbial consortia that flourish with different genetic as well as metabolic potential. This study is applied to a nanopore sequencing to understand the microbial organisms involved in degradation pathways, and their interaction among them. The taxonomic profile determined the occurrence of Proteobacteria, Actinobacteria, Terrabacteria, bacteria, and Firmicutes with the dominance of Burkholderiales. Burkholderia pseudomallei was found to be 13.79% of the classified reads. The Gene ontology evaluation revealed that mobile elements and tRNA genes were the predominant genetic composition of the community with 16% of the total genes. The functional annotation of genes ensured the presence of genes encoding various types of RNA, homo and heteromultimeric proteins and pseudogenes as well. Pathways that involved in effluent treatment such as amines, aromatic, organic, and aromatic compound degradation were also illustrated. Amino acyl tRNA charging, signal transduction, and hormone degradation were the pathways that are identified to be common in all the organisms of the activated sludge. The study elaborated on the xenobiotic degradation that is exclusive of the predominant Burkholderiales and the interaction of them in the community as a whole. The present study revealed the genes, proteins, and the pathways of the activated sludge microbiome which will enhance the perceptions of the core mechanisms of effluent degradation.
工业废水因其所含化学物质会造成污染,对水体构成潜在威胁。活性污泥废水代表了一个由多方面且相互作用的微生物群落组成的生态系统,这些微生物群落具有不同的遗传和代谢潜力。本研究应用纳米孔测序来了解参与降解途径的微生物及其相互作用。分类学分析确定了变形菌门、放线菌门、土杆菌纲、细菌和厚壁菌门的存在,其中伯克霍尔德氏菌目占主导地位。发现类鼻疽伯克霍尔德菌占分类读数的13.79%。基因本体评估显示,移动元件和tRNA基因是群落的主要遗传组成部分,占总基因的16%。基因的功能注释确保了编码各种类型RNA、同多聚体和异多聚体蛋白以及假基因的基因也存在。还阐述了与废水处理相关的途径,如胺类、芳香族、有机和芳香族化合物的降解。氨酰tRNA充电、信号转导和激素降解是在活性污泥的所有微生物中都常见的途径。该研究详细阐述了除主要的伯克霍尔德氏菌目之外的异生素降解及其在整个群落中的相互作用。本研究揭示了活性污泥微生物组的基因、蛋白质和途径,这将增强对废水降解核心机制的认识。