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通过对人类 BM 和 UCB 细胞的单细胞转录组分析揭示的红系分化连续体的假定调节因子。

Putative regulators for the continuum of erythroid differentiation revealed by single-cell transcriptome of human BM and UCB cells.

机构信息

Department of Medical Genetics, School of Basic Medical Sciences, Southern Medical University, 510515 Guangzhou, China.

Guangdong Technology and Engineering Research Center for Molecular Diagnostics of Human Genetic Diseases, 510515 Guangzhou, China.

出版信息

Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12868-12876. doi: 10.1073/pnas.1915085117. Epub 2020 May 26.

DOI:10.1073/pnas.1915085117
PMID:32457162
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7293633/
Abstract

Fine-resolution differentiation trajectories of adult human hematopoietic stem cells (HSCs) involved in the generation of red cells is critical for understanding dynamic developmental changes that accompany human erythropoiesis. Using single-cell RNA sequencing (scRNA-seq) of primary human terminal erythroid cells (CD34CD235a) isolated directly from adult bone marrow (BM) and umbilical cord blood (UCB), we documented the transcriptome of terminally differentiated human erythroblasts at unprecedented resolution. The insights enabled us to distinguish polychromatic erythroblasts (PolyEs) at the early and late stages of development as well as the different development stages of orthochromatic erythroblasts (OrthoEs). We further identified a set of putative regulators of terminal erythroid differentiation and functionally validated three of the identified genes, , , and , by monitoring cell differentiation and apoptosis. We documented that knockdown of suppressed the commitment of HSCs to erythroid lineage and cell proliferation and delayed differentiation of colony-forming unit-erythroid (CFU-E) to the proerythroblast stage (ProE). In contrast, the knockdown of and delayed differentiation of PolyE to OrthoE stage. Taken together, the convergence and divergence of the transcriptional continuums at single-cell resolution underscore the transcriptional regulatory networks that underlie human fetal and adult terminal erythroid differentiation.

摘要

精确区分参与红细胞生成的成人造血干细胞(HSCs)的分化轨迹,对于理解伴随人类红细胞生成的动态发育变化至关重要。我们通过对直接从成人骨髓(BM)和脐血(UCB)分离的终末红细胞(CD34CD235a)进行单细胞 RNA 测序(scRNA-seq),以空前的分辨率记录了终末分化的人类成红细胞的转录组。这些见解使我们能够区分早期和晚期多色性成红细胞(PolyE)以及正染性成红细胞(OrthoE)的不同发育阶段。我们进一步确定了一组潜在的终末红细胞分化调节剂,并通过监测细胞分化和细胞凋亡,对其中的三个基因、、和进行了功能验证。我们记录到,下调会抑制 HSCs 向红细胞系的定向分化和细胞增殖,并延迟集落形成单位-红细胞(CFU-E)向原红细胞阶段(ProE)的分化。相比之下,下调和会延迟 PolyE 向 OrthoE 阶段的分化。总之,单细胞分辨率下转录连续体的趋同和分歧突出了人类胎儿和成人终末红细胞分化的转录调控网络。

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本文引用的文献

1
A systematic performance evaluation of clustering methods for single-cell RNA-seq data.单细胞RNA测序数据聚类方法的系统性能评估
F1000Res. 2018 Jul 26;7:1141. doi: 10.12688/f1000research.15666.3. eCollection 2018.
2
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data.用于中等规模10x基因组学单细胞RNA测序数据的R语言聚类工具比较
F1000Res. 2018 Aug 15;7:1297. doi: 10.12688/f1000research.15809.2. eCollection 2018.
3
MYB - A regulatory factor in hematopoiesis.MYB - 造血中的调节因子。
Gene. 2018 Jul 30;665:6-17. doi: 10.1016/j.gene.2018.04.065. Epub 2018 Apr 25.
4
miR-181a regulates erythroid enucleation the regulation of Xpo7 expression.miR-181a通过调节Xpo7的表达来调控红细胞去核过程。
Haematologica. 2018 Aug;103(8):e341-e344. doi: 10.3324/haematol.2017.171785. Epub 2018 Mar 22.
5
Molecular transitions in early progenitors during human cord blood hematopoiesis.人类脐血造血过程中早期祖细胞的分子转变。
Mol Syst Biol. 2018 Mar 15;14(3):e8041. doi: 10.15252/msb.20178041.
6
An accurate and robust imputation method scImpute for single-cell RNA-seq data.一种用于单细胞 RNA-seq 数据的准确稳健的插补方法 scImpute。
Nat Commun. 2018 Mar 8;9(1):997. doi: 10.1038/s41467-018-03405-7.
7
Reconstruction of complex single-cell trajectories using CellRouter.使用 CellRouter 重建复杂的单细胞轨迹。
Nat Commun. 2018 Mar 1;9(1):892. doi: 10.1038/s41467-018-03214-y.
8
Population snapshots predict early haematopoietic and erythroid hierarchies.人群快照预测早期造血和红细胞谱系。
Nature. 2018 Mar 1;555(7694):54-60. doi: 10.1038/nature25741. Epub 2018 Feb 21.
9
Hierarchically related lineage-restricted fates of multipotent haematopoietic stem cells.多能造血干细胞的层次相关谱系限制命运。
Nature. 2018 Feb 1;554(7690):106-111. doi: 10.1038/nature25455. Epub 2018 Jan 3.
10
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Am J Hematol. 2018 Aug;93(4):494-503. doi: 10.1002/ajh.25015. Epub 2018 Jan 9.