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Prospective Clinical Validation of the InVisionFirst-Lung Circulating Tumor DNA Assay for Molecular Profiling of Patients With Advanced Nonsquamous Non-Small-Cell Lung Cancer.InVisionFirst-Lung循环肿瘤DNA检测用于晚期非鳞状非小细胞肺癌患者分子谱分析的前瞻性临床验证
JCO Precis Oncol. 2019 Apr 25;3. doi: 10.1200/PO.18.00299. eCollection 2019.
2
Clinical feasibility of NGS liquid biopsy analysis in NSCLC patients.非小细胞肺癌患者 NGS 液体活检分析的临床可行性。
PLoS One. 2019 Dec 20;14(12):e0226853. doi: 10.1371/journal.pone.0226853. eCollection 2019.
3
Ultra-deep massively parallel sequencing with unique molecular identifier tagging achieves comparable performance to droplet digital PCR for detection and quantification of circulating tumor DNA from lung cancer patients.采用独特分子标识符标记的超深度大规模平行测序与数字液滴 PCR 检测和定量肺癌患者循环肿瘤 DNA 的性能相当。
PLoS One. 2019 Dec 16;14(12):e0226193. doi: 10.1371/journal.pone.0226193. eCollection 2019.
4
Comparison of different semi-automated cfDNA extraction methods in combination with UMI-based targeted sequencing.不同半自动cfDNA提取方法与基于UMI的靶向测序相结合的比较
Oncotarget. 2019 Oct 1;10(55):5690-5702. doi: 10.18632/oncotarget.27183.
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Standardization of Sequencing Coverage Depth in NGS: Recommendation for Detection of Clonal and Subclonal Mutations in Cancer Diagnostics.二代测序中测序覆盖深度的标准化:癌症诊断中克隆性和亚克隆性突变检测的建议
Front Oncol. 2019 Sep 4;9:851. doi: 10.3389/fonc.2019.00851. eCollection 2019.
6
Tumor-derived DNA from pleural effusion supernatant as a promising alternative to tumor tissue in genomic profiling of advanced lung cancer.胸腔积液上清液中的肿瘤衍生 DNA 作为晚期肺癌基因组分析中肿瘤组织的有前途的替代物。
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7
Monitoring Therapeutic Response and Resistance: Analysis of Circulating Tumor DNA in Patients With ALK+ Lung Cancer.监测治疗反应和耐药性:ALK+肺癌患者循环肿瘤 DNA 分析。
J Thorac Oncol. 2019 Nov;14(11):1901-1911. doi: 10.1016/j.jtho.2019.08.003. Epub 2019 Aug 22.
8
Maximum allele frequency observed in plasma: A potential indicator of liquid biopsy sensitivity.血浆中观察到的最大等位基因频率:液体活检敏感性的潜在指标。
Oncol Lett. 2019 Aug;18(2):2118-2124. doi: 10.3892/ol.2019.10490. Epub 2019 Jun 18.
9
Liquid Biopsy by Next-Generation Sequencing: a Multimodality Test for Management of Cancer.液体活检的下一代测序:癌症管理的多模态检测。
Curr Hematol Malig Rep. 2019 Oct;14(5):358-367. doi: 10.1007/s11899-019-00532-w.
10
Sensitivity of next-generation sequencing assays detecting oncogenic fusions in plasma cell-free DNA.基于游离血浆 DNA 的下一代测序技术检测致瘤融合基因的敏感性
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液体活检与组织活检分析在晚期非小细胞肺癌靶向下一代测序中的比较:全面的系统评价。

Comparison of liquid-based to tissue-based biopsy analysis by targeted next generation sequencing in advanced non-small cell lung cancer: a comprehensive systematic review.

机构信息

Oncology Working Group, Society of Junior Doctors, Athens, Greece.

1st Department of Medical Oncology, Theageneio Anticancer Hospital, Thessaloníki, Greece.

出版信息

J Cancer Res Clin Oncol. 2020 Aug;146(8):2051-2066. doi: 10.1007/s00432-020-03267-x. Epub 2020 May 27.

DOI:10.1007/s00432-020-03267-x
PMID:32462295
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7456570/
Abstract

PURPOSE

To explore whether targeted next generation sequencing (NGS) of liquid biopsy in advanced non-small cell lung cancer (NSCLC) could potentially overcome the innate problems that arise with standard tissue biopsy, like intratumoral heterogeneity and the inability to obtain adequate samples for analysis.

METHODS

The Scopus, Cochrane Library, and MEDLINE (via PubMed) databases were searched for studies with matched tissue and liquid biopsies from advanced NSCLC patients, analyzed with targeted NGS. The number of mutations detected in tissue biopsy only, liquid biopsy only, or both was assessed and the positive percent agreement (PPA) of the two methods was calculated for every clinically relevant gene.

RESULTS

A total of 644 unique relevant articles were retrieved and data were extracted from 38 studies fulfilling the inclusion criteria. The sample size was composed of 2000 mutations tested in matched tissue and liquid biopsies derived from 1141 patients. No studies analyzed circulating tumor cells. The calculated PPA rates were 53.6% (45/84) for ALK, 53.9% (14/26) for BRAF, 56.5% (13/23) for ERBB2, 67.8% (428/631) for EGFR, 64.2% (122/190) for KRAS, 58.6% (17/29) for MET, 54.6% (12/22) for RET, and 53.3% (8/15) for ROS1. We additionally recorded data for 65 genes that are not recommended by current guidelines for mutational testing. An extra category containing results of unspecified genes was added, with a PPA rate of 55.7% (122/219).

CONCLUSION

Despite many advantages, liquid biopsy might be unable to fully substitute its tissue counterpart in detecting clinically relevant mutations in advanced NSCLC patients. However, it may serve as a helpful tool when making therapeutic decisions. More studies are needed to evaluate its role in everyday clinical practice.

摘要

目的

探讨在晚期非小细胞肺癌(NSCLC)中,靶向下一代测序(NGS)是否能克服组织活检固有的问题,如肿瘤内异质性和无法获得足够的样本进行分析。

方法

在 Scopus、Cochrane 图书馆和 MEDLINE(通过 PubMed)数据库中搜索了关于晚期 NSCLC 患者的匹配组织和液体活检,以及使用靶向 NGS 进行分析的研究。评估仅在组织活检、液体活检或两者中检测到的突变数量,并计算了两种方法对每个临床相关基因的阳性百分率(PPA)。

结果

共检索到 644 篇相关的独特文章,并从符合纳入标准的 38 项研究中提取数据。样本量由来自 1141 名患者的 2000 个突变进行测试。没有研究分析循环肿瘤细胞。计算得出的 PPA 率为:ALK 为 53.6%(45/84),BRAF 为 53.9%(14/26),ERBB2 为 56.5%(13/23),EGFR 为 67.8%(428/631),KRAS 为 64.2%(122/190),MET 为 58.6%(17/29),RET 为 54.6%(12/22),ROS1 为 53.3%(8/15)。我们还记录了目前不推荐用于突变检测的 65 个基因的额外数据。添加了一个包含未指定基因结果的额外类别,PPA 率为 55.7%(122/219)。

结论

尽管有许多优势,但液体活检可能无法完全取代其组织对应物,无法在晚期 NSCLC 患者中检测到临床相关的突变。然而,它可能在制定治疗决策时作为一种有用的工具。需要更多的研究来评估其在日常临床实践中的作用。